miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|257174757|gb|GT035913.1|GT035913 TATCAACAATTATCTACAAATGTCCATCAAAAGAGAACATTCCGCATGAAACATCTATTCAAGAACTTCCTCCAGCCATT
ATACTTCCTTCAGAACTTCCTGTTTACCCGGCTAGTAATTTATACCCAGTCTCAGATGCCGCTATGCCTTCTGGACATCC
AAGTCTAGCTATCTTAGGGGCAACTCGTCATGGTTCTCATGCTCCTGAATTTACTATGCCCGCTGATGCCCATGGAAGAT
TGCCCATTTATCAATCTATGGTTCCTGCTATTCCTACTTATAACACCCCAAAATGTTCAGGAGAGCTATTGCTGCGTGTT
GTATGCCCTGGTGACAAGATTGGGTTGGTTATTGGTAAAGGTGGGGTGACCATAAAGAGTATAAGGAAAGAGAGTGGTGC
AAGAGTAGATGTTGATGACGCAAAGAATGACAGGGAGGAAAGTATAATCACCATTGAATCCACTGAGGCCACCGATGATG
TCAAGTCTGCAGCAGTGGAAGCTGTTCTGCTGCTTCAAGCAAAGATCAACGATGAAAATGAAGATAGAATGTATCTTCGC
CTTCTTGTTCCGGGTAATGTCATTGGCTGTCTTATCGGCAAGGGTGGTTCAATCATTAATGATATGCGGAGTAAGTCTAA
GGCAACTATCCACATATCAAAGGGCAGTAAGCCCCGGAGGGCATCTTCCAGTGATGAGCTCGTTGAGGTGCTCGGGGAAG
TGGACAAACTGCGTGATGCTCTTGTTCAGATAGTTCTAAGACTTCGGGAAGATGTTCTGAAGGACAGTGTGGAGAGGCAA
AACTCTGGCAAGGATGGGAAGCTAACTGTGGCCACTACTGAACCCGTGTATTCAGCAGCTTTTCAATGCCAGCGTTACTA
CCTTACAGTCAACAAATCACTCCATTACGCTATGATCAAAGGAGTGAAGCTGAACGTGGTTCAGATATATATCCTCGTAG
CAGCTCGTATGGATACAA




Most similar to sp|P58223|Y4837_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375
           OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
          Length = 606

 Score =  177 bits (448), Expect = 1e-43
 Identities = 118/272 (43%), Positives = 164/272 (60%), Gaps = 9/272 (3%)
 Frame = +3

Query: 3   STIIYKCPSKENIPHETSIQELPPA-IILPSELP--VYPASNLYPVSDAAMPSGHPSLAI 173
           S I+YK   +ENIP +++ Q++P A +I+PS+L   VYP +  Y   D  +  G    + 
Sbjct: 211 SAIMYKINPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQGAGVPSY 270

Query: 174 LGATRHGSHAPEFTMPAD-AHGRLPIYQSMVPAIPTYNTPKCSGELLLRVVCPGDKIGLV 350
             A        +F   A+ A   +P++ S +P    +     S EL+ +V+CP   I  V
Sbjct: 271 FNALS----VSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRV 326

Query: 351 IGKGGVTIKSIRKESGARVDVDDAKNDRXXXXXXXXXXXAT---DDVKSAAVEAVLLLQA 521
           IGKGG TIK IR+ SG+ ++V+D++  +           AT   DD+KS AVEAVLLLQ 
Sbjct: 327 IGKGGSTIKRIREASGSCIEVNDSRT-KCGDDECVIIVTATESPDDMKSMAVEAVLLLQE 385

Query: 522 KINDENEDRMYLRLLVPGNVIGCLIGKGGSIINDMRSKSKATIHISKGSKPRRASSSDEL 701
            INDE+ + + ++LLV   VIGC+IGK GS+IN++R ++ A I ISKG K       D+L
Sbjct: 386 YINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKK-------DDL 438

Query: 702 VEVLGEVDKLRDALVQIVLRLREDVL--KDSV 791
           VEV GEV  +RDAL+QIVLRLREDVL  KDSV
Sbjct: 439 VEVSGEVSSVRDALIQIVLRLREDVLGDKDSV 470