miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25842414|gb|BU334413.1|BU334413 GCGGCTCGAGGGTGTGCAAAACTTTGTACCTGCTTTTTGCCACACTGCAACACTTTACAGATGTGGAAGATGTGAAATTT
GTCATCAATTATGACTACCCTAACTCCTCTGAGGACTATATCCACCGAATTGGACGAACTGCCCGCAGTACCAAAACAGG
CACAGCATATACATTCTTTACTCCTAACAATATTAAGCAAGTAAATGACCTCATCTCTGTGCTTCGGGAGGCTAATCAAG
CCATCAACCCTAAATTGCTTCAGTTGATTGAAGACAGAGGTTCAGGTCGTTCCCGAGGTGACCGACGTGACAGATACTCT
GCGGGCAAAAGGGGTGGATTTAGTAGCTTTAGAGAGAGGGAGAACTTTGAGAGAACTTATGGTGCACTAGGAAAGAGAGA
CTTTGGAGCCAAAGCTCAAAATGGGGCCTACAGTACCCAGAGTTTCAGTAATGGAACTCCTTTTGGAAATGGCTTTGCAG
CTGCAGGCATGCAAGCTGGCTTCAGGGCTGGTAACCCTGCAGGAGCTTACCAGAATGGTTATGATCAGCAGTATGGAAGT
AACATTGCAAATATGCACAATGGCATGAACCAACAGCAGTATGCATATCCTGCCACTGGTGCTGCTCCTATGATAGGTTA
CCCAATTGCCAGCGAGTTATTCTCAATAACTTAGTGTATTTAAATGTCTCAGTTTTTCATAATTGCTCTTTATATCGGTG
TCATCTCAGAACAGGATAGTTATTAAGAAATGC




Most similar to sp|Q5R4I9|DDX5_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
            OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  296 bits (758), Expect = 1e-79
 Identities = 148/204 (72%), Positives = 165/204 (80%), Gaps = 8/204 (3%)
 Frame = +3

Query: 60   DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQ 239
            DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV+DLISVLREANQ
Sbjct: 406  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 240  AINPKLLQLIE------XXXXXXXXXXXXXXYSAGKRGGFSSFRERENFERTYGALGKRD 401
            AINPKLLQL+E                    YSAGKRGGF++FR+REN++R Y +L KRD
Sbjct: 466  AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 402  FGAKAQNGAYSTQSFSNGTPFGNGFAAAGMQAGFRAGNPAGAYQNGYD--QQYGSNIANM 575
            FGAK QNGAYS  +++NG+ FG+ F +AG+Q  FR GNP G YQNGYD  QQYGSN+ NM
Sbjct: 526  FGAKTQNGAYSAANYTNGS-FGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNM 584

Query: 576  HNGMNQQQYAYPATGAAPMIGYPI 647
            HNGMNQQ YAYPAT AAPMIGYP+
Sbjct: 585  HNGMNQQAYAYPATAAAPMIGYPM 608