miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|26151328|gb|BY045885.1|BY045885 GGGAAAGAGGCAGGTTCCCGGGGCAAAGGTGGCTCTGCAGCACAATCTAGGCCTCGGAGGAGCTGTGGTTGTCACCCTCT
ACAGGATGGGTTTTCCGAAGCTGCCAGCTCCTTCAGGACGCACCAGGTTTCAGCTGCTCCCACCAGCTCTGCAGGGGATG
GATTCAAGGCAAACCTCGTCTTCAAGGAGATTGAGAAGAAGCTTGAAGAGGAAGGGGAACCAGTTCGTGAAGAAAATCGG
TGGCATTTTTGCCTTCAAAGTGAAAGATGGCCCTGCAGGCAAAGAAGCTACCTGGGTGGTGGATGTGAAGAATGGCAAAG
GATCTGTGCTTCCCAATTCAGATAAGAAGGCTGACTGCACAATCACCATGCCC




Most similar to sp|P32020|NLTP_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P32020|NLTP_MOUSE Non-specific lipid-transfer protein OS=Mus
           musculus GN=Scp2 PE=1 SV=3
          Length = 547

 Score =  163 bits (412), Expect = 4e-40
 Identities = 84/123 (68%), Positives = 89/123 (72%)
 Frame = +2

Query: 2   GKRQVPGAKVALQHNLGLGGAVVVTLYRMGFPKLPAPSGRTRFQLLPPALQGMDSRQTXX 181
           GKRQVPGAKVALQHNLGLGGAVVVTLYRMGFP+  +     +    P +  G   +    
Sbjct: 377 GKRQVPGAKVALQHNLGLGGAVVVTLYRMGFPEAASSFRTHQVSAAPTSSAGDGFKANLV 436

Query: 182 XXXXXXXXXXXGNQFVKKIGGIFAFKVKDGPAGKEATWVVDVKNGKGSVLPNSDKKADCT 361
                      G QFVKKIGGIFAFKVKDGP GKEATWVVDVKNGKGSVLPNSDKKADCT
Sbjct: 437 FKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCT 496

Query: 362 ITM 370
           ITM
Sbjct: 497 ITM 499