miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|26211896|gb|BY101279.1|BY101279 GGGCTCTGCAGCACAATCTAGGCCTCGGAGGAGCTGTGGTTGTCACCCTCTACAGGATGGGTTTTCCCGAAGCTGCCAGC
TCCTTCAGGACGCACCAGGTTTCAGCTGCTCCCACCAGCTCTGCAGGGGATGGATTCAAGGCAAACCTCGTCTTTAAGGA
GATTGAGAAGAAGCTTGAAGAGGAAGGGGAACAGTTCGTGAAGAAAATCGGTGGCATTTTTGCCTTCAAAGTGAAAGATG
GCCCTGCAGGCAAAGAAGCTACCTGGGTGGTGGATGTGAAGAATGGCAAAGGATCTGTGCTTCCCAATTCAGATAAGAAG
GGTGACTGCACAATCACCATGGCCGACTCAGAACTGCTGGCTTTGATGA




Most similar to sp|P32020|NLTP_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P32020|NLTP_MOUSE Non-specific lipid-transfer protein OS=Mus
           musculus GN=Scp2 PE=1 SV=3
          Length = 547

 Score =  211 bits (537), Expect = 1e-54
 Identities = 107/122 (87%), Positives = 108/122 (88%)
 Frame = +3

Query: 3   ALQHNLGLGGAVVVTLYRMGFPEAASSFRTHQVSAAPTSSAGDGFKANLVFXXXXXXXXX 182
           ALQHNLGLGGAVVVTLYRMGFPEAASSFRTHQVSAAPTSSAGDGFKANLVF         
Sbjct: 387 ALQHNLGLGGAVVVTLYRMGFPEAASSFRTHQVSAAPTSSAGDGFKANLVFKEIEKKLEE 446

Query: 183 XXXQFVKKIGGIFAFKVKDGPAGKEATWVVDVKNGKGSVLPNSDKKGDCTITMADSELLA 362
              QFVKKIGGIFAFKVKDGP GKEATWVVDVKNGKGSVLPNSDKK DCTITMADS+LLA
Sbjct: 447 EGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLA 506

Query: 363 LM 368
           LM
Sbjct: 507 LM 508