miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|262521237|gb|FP046495.1|FP046495 GAACCTATGTTAATAACCCCAAATTTTAATACCAACCCTTTTGATGATGATGATGATGGGAGAAGAGGGGCTTCTTCATC
ATCATCCTCATATTCTGGATCTGCAGCAGCAAAAGACAGATACAGAAATGATTTCCATGACTCAGGAGGATTACAGAACC
AGAGTGTACAGGATCTGGAGAATTATGCTGTGTACAAAGCTGAAGAGACAACAAAGACAACTAACAATTGCCTGAAGCTT
GCAGAGGAAATAAGGGAGGATGCTACTAAGACCCTTGATATGTTGCATCATCAGGGTGAGCAAATCACAAGAACCCACCA
GATGGCTGCTGATACGGATAAGGATCTGAGTCGGGGAGAGAAGCTTTTAAATAACCTTGGTGGCATGTTCTCTAAGACTT
GGAAGCCAAAGAAGACCCGGGAGATTACAGGGCCTATAAATACAGCAGATAATTTATCCAAAAGAAGTGCAAACCACTCA
GAGCAGAGGGAAAAGTTGGGTTTAGCTCATGTACCCAAAGGACGGTCAGCTTCTCGAACAACTCCTCCTGAACCAACAAA
CGCCTTGCAGAAAGTTGAGGTGGAGAAGGCAAAGCAAGATGATGCCCTTTCGGATCTAAGTAAT




Most similar to sp|Q9LMG8|SNP30_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30
           OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1
          Length = 263

 Score =  246 bits (628), Expect = 8e-65
 Identities = 127/208 (61%), Positives = 151/208 (72%)
 Frame = +1

Query: 1   EPMLITPNFNTNPFXXXXXXXXXXXXXXXXXXXXXXXKDRYRNDFHDSGGLQNQSVQDLE 180
           EP+LITP+F+ +                          D+Y+N F+DSGGLQ+Q+ ++LE
Sbjct: 34  EPILITPDFDDD--------------------------DKYKNGFNDSGGLQSQTTEELE 67

Query: 181 NYAVYKAEETTKTTNNCLKLAEEIREDATKTLDMLHHQGEQITRTHQMAADTDKDLSRGE 360
            YAVYKAEETTK  NNCLK+AE+IR D  +TL+MLH QGEQI RTH+MA D DKDLSRGE
Sbjct: 68  KYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQGEQINRTHEMAVDMDKDLSRGE 127

Query: 361 KLLNNLGGMFSKTWKPKKTREITGPINTADNLSKRSANHSEQREKLGLAHVPKGRSASRT 540
           KLLNNLGGMFSK WKPKKT+ ITGP+ T D  SK+S NH E+REKLGL    KGRS+S+ 
Sbjct: 128 KLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENHKEEREKLGLG--AKGRSSSQP 185

Query: 541 TPPEPTNALQKVEVEKAKQDDALSDLSN 624
              +PTNALQKVE EKAKQDD LSDLS+
Sbjct: 186 ALDQPTNALQKVEQEKAKQDDGLSDLSD 213