miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|268228918|gb|GT387015.1|GT387015 GGGGGTGCACATCAAGCAAATATCTACTGTATAAATTTCAACAGTTCATCCACGCTTCTTTGTGTGTCCTCTGATCATGG
CACGATTCACATTTTTGCCCTCGCCGACTTGAAGCTGAATAAACAGTCAAGTTTAGCGAATACCATGTTCTTGCCCAAGT
ATTTTTCGTCCACGTGGTCTTTCTGCAAGTTTACTGTTCCAAGTGGACCTCCTTGCATATGTGCCTTTGGACAAGATAAC
AATTCTATTATTGTTGTTTGTGCTGATGGTTCATACTACAAATTTGCCTTCAATTTTAAAGGCGAATGCGTGAGAGAACA
TTGTGCTCAATTTTTGGAATTAACAGGTGATAATTTGTAATTGGGGGATACTAATGATTGAAGTGAATATATTTTGCTCT
TTCTATATCTGTTCTTGTGATTAAATTAGATACCTTCGTAGCAAAGGTAATACAACGTATTGAGAGTCTGCTATTAGAAT
GTAAGTAAAAATTATTATGTACTGTTTCACAATTTTGTATTTAATAAGGAAAGAAAAGAACATTGCGTAATTATCAAGCC
ATGCTTTCATGCCGAATCATCTATCATGGGTGATGCCAATTCTGACTGAATTGACACCAGGCTGATAGATGATTCGACAT
GATAGATGTTTGCATGACTGAGAAAATGTTAAGATAAATTCACAATC




Most similar to sp|Q9CR39|WIPI3_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94A68|Y1669_ARATH Uncharacterized oxidoreductase At1g06690,
           chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1
           SV=1
          Length = 377

 Score =  134 bits (336), Expect(2) = 1e-49
 Identities = 66/96 (68%), Positives = 82/96 (85%), Gaps = 2/96 (2%)
 Frame = +1

Query: 268 DGMTLFDTAEVYGTAL-MGAVNSESLLGGFIKERQEKEQ-IDVAVATKFAALPWRFGRGS 441
           +G+  FDTAEVYG+   +GA++SE+LLG FI+ER+E+    +V+VATKFAALPWRFGR S
Sbjct: 97  NGIDFFDTAEVYGSKFSLGAISSETLLGRFIRERKERYPGAEVSVATKFAALPWRFGRES 156

Query: 442 VLSALKKSLDRLGLSSVELYQVHWPGLWGNEGYLDG 549
           V++ALK SL RL LSSV+LYQ+HWPGLWGNEGYLDG
Sbjct: 157 VVTALKDSLSRLELSSVDLYQLHWPGLWGNEGYLDG 192



 Score = 83.6 bits (205), Expect(2) = 1e-49
 Identities = 34/54 (62%), Positives = 44/54 (81%)
 Frame = +2

Query: 113 EEGKVRLGGSEVAVSKLGIGAWSWGDTTYWKGSEWDDRRLQEAKAAFDTSIEMG 274
           EE KV+LGGS++ V+KLGIG WSWGD +YW   +WDDR+L+ AK AFDTS++ G
Sbjct: 45  EESKVKLGGSDLKVTKLGIGVWSWGDNSYWNDFQWDDRKLKAAKGAFDTSLDNG 98


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9CR39|WIPI3_MOUSE WD repeat_field domain phosphoinositide-interacting
           protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2
          Length = 344

 Score =  183 bits (464), Expect = 1e-45
 Identities = 83/118 (70%), Positives = 96/118 (81%)
 Frame = +1

Query: 4   GAHQANIYCINFNSSSTLLCVSSDHGTIHIFALADLKLNKQSSLANTMFLPKYFSSTWSF 183
           G+  ANIYCINFN  ++L+CVSSDHGT+HIFA  D K NKQSSLA+  FLPKYFSS WSF
Sbjct: 227 GSQAANIYCINFNQDASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYFSSKWSF 286

Query: 184 CKFTVPSGPPCICAFGQDNNSIIVVCADGSYYKFAFNFKGECVREHCAQFLELTGDNL 357
            KF VPSG PCICAFG + N++I +CADGSYYKF F+ KGECVR+ CAQFLE+T D L
Sbjct: 287 SKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFSPKGECVRDVCAQFLEMTDDKL 344