miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|270051933|gb|GT740003.1|GT740003 GTTGGGAACCTGACAGGCCTCCAAACGCTTCACTTGAATGGGTGCTCCACTCTGCAGACGCTCCCAGACTCGGTTGGGAA
CCTGATGGGCCTCCAAACGCTTGACTTGAGTTGGTGCTCCACTCTGCAGAGGCTCCCAGACTCGGTTGGGAACCTGACGG
GCCTCCAAACGCTTCACTTGAGCCGGTGCTCCACTCTGCAGATGCTCCCAGACTCGGTTGGGAACTTGACAGGCCTCCAA
ACGCTTAACTTGAGCCTGTCCTCCACTCTACAGACGCTCCCAGACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTTA
CTTGCGCCGGTGCTCCACTATGCAGACGCTCCCAGACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGCGCG
GGTGCTCCACTCTGCAGACGTTCCCAGACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGAGCTGGTGGTCC
ACTCTGCAGACGCTCCCAGACTCGGTTGGAAACCTGACGGGCCTCCAAACGCTTGACTTGAGCCGGTGCTCCACTCTGCA
GACGCTCCCAAACTCGGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGAGCGGGTGCTCCACTCTGCAGACGCTCC
CAGACTCAGTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGAGCGGGTGCTCCACTCTGCAGACGCTCCCAGACTCG
GTTGGGAACCTGACGGGCCTCCAAACGCTTGACTTGAGCAAGTGCTCCAATTTACATATGTTGACCAATATTGAGCATTT
GAGCTCATTGGAGAAGCTTAATGTGAAGCAATGTCCCAAAC




Most similar to sp|O23530|SNC1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
            OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
          Length = 1301

 Score =  156 bits (395), Expect = 1e-37
 Identities = 103/298 (34%), Positives = 160/298 (53%), Gaps = 24/298 (8%)
 Frame = +1

Query: 13   TGLQTLHLNGCSTLQTLPDSVGNLMGLQTLDLSWCSTLQRLPDSVGNLTGLQTLHLSRCS 192
            T L++L LN C +L TLP ++GNL  L  L++  C+ L+ LP  V NL+ L+TL LS CS
Sbjct: 796  TKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCS 854

Query: 193  TLQMLPDSVXXXXXXXXXXXXXXXXXXXXPDSVGNLTGLQTLYLRRCSTMQTLPDSVGNL 372
            +L+  P                       P ++GNL  L  L +++C+ ++ LP  V NL
Sbjct: 855  SLRSFP----LISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NL 909

Query: 373  TGLQTLDLRGCSTLQTFPDSVGNLTGLQTLDLSWW----STLQTLPDSVGNLTGLQTLDL 540
            + L+TLDL GCS+L++FP        L +  + W     + ++ +PD +   T L+ L L
Sbjct: 910  SSLETLDLSGCSSLRSFP--------LISESIKWLYLENTAIEEIPD-LSKATNLKNLKL 960

Query: 541  SRCSTLQTLPNSVGNLTGLQTLDLSGCSTLQTLPDSVGNLTGLQTLDLSGCSTLQT---- 708
            + C +L TLP ++GNL  L + ++  C+ L+ LP  V NL+ L  LDLSGCS+L+T    
Sbjct: 961  NNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSLRTFPLI 1019

Query: 709  ----------------LPDSVGNLTGLQTLDLSKCSNLHMLTNIEHLSSLEKLNVKQC 834
                            +P ++GNL  L  L++ +C+ L +L    +LSSL  L++  C
Sbjct: 1020 STNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGLEVLPTDVNLSSLMILDLSGC 1077



 Score =  130 bits (327), Expect = 1e-29
 Identities = 87/279 (31%), Positives = 144/279 (51%), Gaps = 19/279 (6%)
 Frame = +1

Query: 55   QTLPDSVGNLMGLQTLDLSWCSTLQRLPDSVGNLTGLQTLHLSRCSTLQMLPDSVXXXXX 234
            + L + + +L  L+ +DLS    L  +PD +   T L++L L+ C +L  LP ++     
Sbjct: 763  EKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTI----- 816

Query: 235  XXXXXXXXXXXXXXXPDSVGNLTGLQTLYLRRCSTMQTLPDSVGNLTGLQTLDLRGCSTL 414
                               GNL  L  L ++ C+ ++ LP  V NL+ L+TLDL GCS+L
Sbjct: 817  -------------------GNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSL 856

Query: 415  QTFPDSVGNLTGLQTLDLSWWSTLQTLPDSVGNLTGLQTLDLSRCSTLQTLPNSVGNLTG 594
            ++FP    N+  L   +    + ++ +P ++GNL  L  L++ +C+ L+ LP  V NL+ 
Sbjct: 857  RSFPLISTNIVWLYLEN----TAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSS 911

Query: 595  LQTLDLSGCSTLQTLP-------------------DSVGNLTGLQTLDLSGCSTLQTLPD 717
            L+TLDLSGCS+L++ P                     +   T L+ L L+ C +L TLP 
Sbjct: 912  LETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPT 971

Query: 718  SVGNLTGLQTLDLSKCSNLHMLTNIEHLSSLEKLNVKQC 834
            ++GNL  L + ++ +C+ L +L    +LSSL  L++  C
Sbjct: 972  TIGNLQKLVSFEMKECTGLEVLPIDVNLSSLMILDLSGC 1010