miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|270406051|gb|GT788497.1|GT788497 GAAACAAAGATTTTCTCTCAATAAAAGAAAAAAAACAGTCACTGTTACAATTGCATCCGATTGTTTACCTAGATAGCCTC
AAACATTGTCCTTCCTCCGTCCCAAAACAAGTGACTTAGATTTGTATAGATTTTTATACAAATTCACGTCCCTTATTTCC
GGATGGAGGGAGTATGTTGCTAAATCACCATCATATAAGCTCAGGAAGGTAAGAAAAGAAGACGACATCCACTATTCCAC
TATATGATGTTACTTTAAGCAAATGCACACAGATGGCAGGGAAAACCCCATGTTATCTAGTTACAGAACAATCTGCAAGT
AACCTCACCAAGCAACCATCCAGAAAGGTAGAGAGACCACGGATACTGATCACACAACGGCTACAAAGAATTGTATAAAT
GGCAGAGGAAGGAATTGGTTTCGCTCTTCAGTTTAGTTATCGCCACAAGCCCGCTAGTGTACACCACTACACCGTTTCTT
CTTAATCCAGCTTCTCAAGCTCACCCATTCTCTCAATGATTGCCTTTTTGCTTGTCTCTTGAAGCTCTCCAGCCAGAATA
AACTCATCCAATATCAAGTAAACCTTATGGAAGTTGAATACTAAATCAAGTCCACACACATTGCTGAAGAAATGGTCCAA
TATCTCCACAAACAAGTGGATACATTTCCAAGTATACCAACTCATTATCAGTGATATCCACACATATTAGAAAAAAACAG
TCCTGCGTATCTCCTGTAGAATACTTTTATGTGTACGGAACTCGACGAAGTTGGTGAACTTGGGGTCTCGATTGACCAC




Most similar to sp|Q84WL9|AP2S_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis
           thaliana GN=AP17 PE=2 SV=1
          Length = 142

 Score =  138 bits (347), Expect = 5e-32
 Identities = 77/104 (74%), Positives = 81/104 (77%)
 Frame = -1

Query: 799 VVNRDPKFTNFVEFRTHKSILQEIRRTVFF*YVWISLIMSWYTWKCIHLFVEILDHFFSN 620
           VVNRD KFTNFVEFRTHK I +      F   V I+     Y  + IHLFVEILDHFFSN
Sbjct: 39  VVNRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYL-ESIHLFVEILDHFFSN 97

Query: 619 VCGLDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKL 488
           VC LDLVFNFHKVYLILDEFILAGELQETSK+AIIERM ELEKL
Sbjct: 98  VCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMSELEKL 141