miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|270425059|gb|GT805253.1|GT805253 GCCTCCGCTCTTCTTCCTCTTCCTCTTCGTGTCTTGTTGGCGGCGGCTTCAAACTGGAAAGCTTGAGCTAGGGTTTCGCC
TTATCCCCTCTCCCCAGCCGGTCAGCGCAGAGTAAGCAAGCGGAGAGAAGAGAGAGGGAAGATGAGCCGTAGCCTGGGGA
TCCCGGTGAAGCTGCTGCACGAGGCGGCGGGGCACGTCGTCACGGTGGAGCTCAAGACCGGCGAGGTCTACAGGGGCTCC
ATGATCGAGTGCGAGGACAACTGGAACTGCCAGATCGAGAACATCACCTTCACCGCCAAGGACGGCAAGGTTTCGCAGCT
GGAGCACGTCTTCATCAGAGGGAGCAGGGTCAGGTTCATGATCATACCCGACATGCTCAAGAACGCCCCCATGTTCAAGC
GCCTCGAGGCTAGGATAAGGGGCAAAGGGTCAGCTATTGGCGTCGGTCGTGGCCGTGCCGTTGCAATGCGTGCTCGGTCT
GCTGGTGGCCGTAGCGGTGGTCCTCCTGTTGGAGGACGAGGTGGTGCGCCTCCTGTGAGGCGGTAGATTTATCCACAGCA
CTGTTTGAGCTGAGCTGCTACCTGTTTGAGGAACTCGCAGTCTTCGCTACCAAAAAATAGCTGGCAGCAGCCATGCTCGT
GAGCTTCTGTACCTCCAGTTTAGTTTGTCTG




Most similar to sp|P62323|SMD3_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3
           OS=Xenopus laevis GN=snrpd3 PE=2 SV=1
          Length = 126

 Score =  130 bits (328), Expect = 6e-30
 Identities = 57/91 (62%), Positives = 76/91 (83%)
 Frame = +1

Query: 151 SLGIPVKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHV 330
           S+G+P+K+LHEA GH+VT E  TGEVYRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 331 FIRGSRVRFMIIPDMLKNAPMFKRLEARIRG 423
           +IRGS++RF+I+PDMLKNAPM K ++ + +G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSMKNKNQG 92