miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|270452623|gb|GT833790.1|GT833790 GGAGGAAACACGTCACTTAAGTCCATAAACGCTATTCCTCCTATCATGGGATACAACCATTCTGATGTTAATAAGAACAT
TGGGTCTGCATCAATAATGGGTGGTTATGTCTATCGAGGATCTACTGATCCCTGCTTGTACGGAAGGTACTTATATGCTG
ACCTGTACGCATCAGCCATGTGGACCGGCACAGAGACCCCAGAGAGCAGTGGGAACTACACGTCCACTCTGATCCCCTTC
AGCTGCTCCAAGAACTCTCCCATACCCTGTGACACTGCTGCTGGTAGCCCTCTCCCATCGCTTGGTTACATATATTCCTT
CGGTGAGGACAACAGCAAGGACATCTACGTCTTGGCAAGCAAAGGTGTCTACCGGGTTGTCCGGCCCAGCTTGTGCAGCT
ATACTTGTCCTATAGAGAAACCCGCGACGAACACGGTGCCTGCTGGTCCTTCGTCAAAGGCGTCAGCAACGAGAATGGGC
AAGCAGATAGGGGCAATTTTACTGTCTGTTATCATGTTCTGGGTTTTGGTAAGATAGGAGGATCCTATTACCTCATGCCT
TGGTGAGCCAATGTAGATTAATCCTGATATCTTAGTAGTACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGCA
CTTGGACCCAGACATGTTTTGTTTCTAGTGCCTGACCACTCATATTGGAGTAATATTAAATGGATGTGAGTAGTTATTGG
CCGGGTGCGGATTTTAATAGAAAAATGAGATGTGTTGTGGA




Most similar to sp|Q94F08|HIPL2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94F08|HIPL2_ARATH HIPL2 protein OS=Arabidopsis thaliana GN=HIPL2
            PE=1 SV=2
          Length = 696

 Score =  190 bits (483), Expect = 8e-48
 Identities = 98/186 (52%), Positives = 125/186 (67%), Gaps = 9/186 (4%)
 Frame = +1

Query: 1    GGNTSLKSINAIPPIMGYNHSDVNKNIGSASIMGGYVYRGSTDPCLYGRYLYADLYASAM 180
            G N S  S N   PI+GYNHS+VNK+ GSASI+GGY YR +TDPC YG YLYADLYA+AM
Sbjct: 511  GENVSSDS-NLTFPILGYNHSEVNKHEGSASIIGGYFYRSNTDPCSYGTYLYADLYANAM 569

Query: 181  WTGTETPESSGNYTSTLIPFSCSKNSPIPCDTAAG--SPLPSLGYIYSFGEDNSKDIYVL 354
            W   E+PE SGN+T +LIPFSCSK+SP+ C  A G  S  P+LGYIYSFG+DN+KDI++L
Sbjct: 570  WAAIESPEDSGNFTDSLIPFSCSKDSPMKCTAAPGGASSGPALGYIYSFGQDNNKDIHLL 629

Query: 355  ASKGVYRVVRPSLCSYTCPIEKPATNTVPAGPSSKA-------SATRMGKQIGAILLSVI 513
             S GVYR+VRPS C+  C  E    +     P+  A       SA ++   +  +L  ++
Sbjct: 630  TSSGVYRIVRPSRCNLACSKENTTASAGKQNPAGSAPPQPLPSSARKLCFSVFLLLSLLM 689

Query: 514  MFWVLV 531
            MF  L+
Sbjct: 690  MFLTLL 695