miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|281377224|gb|GT889395.1|GT889395 GCACGAGGGTCGTAGTAAGAGTTGACGATCGAAACGGTAGGGGAAATGGGGCCAACATCGTCCGGCGTTGTTCTACGTCT
GGCCACCCTTCTGGGGGCCTTCCTCGTCGCCGCTGCAGGGCCGGACCACAAGGACGCGCGCAAGACGTTCTGCTATCATT
CTCGGACTGGTAACAGAACCATCTACGACTACGACATCAAGGATATCCACCAGAAGAGACCGATCGATTGGGACCAGTAC
ACGAACCAGGTCGTACTGATCATCAACGTCGCTTCATTCTGAGGTTCGACTCCCCAGTACTTCCCACTGAATGCACTACA
GTCCAGTATTGGCGACTTCAAGGTTCTTGGAGTTCCTTGCAATCAGTTTTTATTGCAAGAACCGGGTAAAAATGGGACAG
AAATCTTGAACAGCCTCAAGCACGTGAGACCAGGCGGAGGATTTGAGCCGAATTTTGAGTTAACGGAGAAGGTGGAAGTG
AATGGCGCAAATGAACATCCACTCTACACTTTCCTTAAGGCCTATTGTCCGAGCCCGACACAATACTTTGCTGCGAAAGA
GCGTTTGTTCTACGAGAACTTGAAGTCCAGCGACATACGCTGGAATTTCGAGAAGTTTCTCATCGATCGCCAAGGAATTC
CGGTGATGCGTTTCAGCGAAATGTATCCGGTGGAAGATCTTATTCCAGATATAAAGCAGCTGCTGA




Most similar to sp|P23764|GPX3_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           GN=Gpx3 PE=2 SV=2
          Length = 226

 Score =  177 bits (450), Expect = 5e-44
 Identities = 99/211 (46%), Positives = 128/211 (60%), Gaps = 3/211 (1%)
 Frame = +1

Query: 70  VLRLATLLGAFLVAAAGPDH-KDARKTFCYHSRTGNRTIYDYDIKDIHQKRPIDWDQYTN 246
           +LR + LL   L     P   ++  KT C+   +G  TIY+Y    I  +  I + QY  
Sbjct: 4   ILRASCLLSLLLAGFVPPGRGQEKSKTDCHGGMSG--TIYEYGALTIDGEEYIPFKQYAG 61

Query: 247 QVVLIINVASF*GSTPQYFPLNALQSSIGDFK--VLGVPCNQFLLQEPGKNGTEILNSLK 420
           + +L +NVAS+ G T QY  LNALQ  +G F   +LG PCNQF  QEPG+N +EIL SLK
Sbjct: 62  KYILFVNVASYUGLTDQYLELNALQEELGPFGLVILGFPCNQFGKQEPGEN-SEILPSLK 120

Query: 421 HVRPGGGFEPNFELTEKVEVNGANEHPLYTFLKAYCPSPTQYFAAKERLFYENLKSSDIR 600
           +VRPGGGF PNF+L EK +VNG  E   YTFLK  CP   +   +  RLF+E +K  DIR
Sbjct: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIR 180

Query: 601 WNFEKFLIDRQGIPVMRFSEMYPVEDLIPDI 693
           WNFEKFL+   GIP+MR+     V ++  DI
Sbjct: 181 WNFEKFLVGPDGIPIMRWYHRTTVSNVKMDI 211