miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|282723513|gb|GW283933.1|GW283933 GGGCCGCGGCCGGGGACGGTGTGAAAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTAC
TCAGCACCGACCGGGAGGCCTCCATCGACATTCTCCACTCCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCA
GTGCAGGTCAAAGAGCAGAGTATCCTGGAACTGGGGTCTCTCTTGGCGAAGACTGGACAAGCTGCGGAGCTTGGAGGACT
CCTGAAGTATGTGCGACCCTTCTTGAATTCCATCAGCAAGGCTAAGGCAGCTCGTCTGGTCCGATCTCTTCTTGATCTGT
TTCTTGATATGGAAGCAGCTACAGGGCAGGAGGTCGAGTTGTGTTTAGAGTGCATTGAATGGGCCAAATCAGAGAAGCGG
ACTTTCTTACGCCAAGCTTTGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTT
GGGTTCTCAGCTGCTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAA
CATACCATGCCCTGAGCAACCTGCCGAAAGCCCGAGCTGCCTTAACCTCTGCTCGAACTACAGCAAATGCTATCTACTGC
CCCCCTAAATTGCAGGCCACCTTGGATATGCAGTCAGGTATTATCCACGCA




Most similar to sp|Q8BG32|PSD11_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P30792|PMGI_MAIZE 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Zea mays PE=1 SV=1
          Length = 559

 Score =  177 bits (450), Expect(2) = 9e-62
 Identities = 85/111 (76%), Positives = 98/111 (88%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           + A+PKANDQYLPPFVIVD+SG +VGP++DGDAVVT NFRAD MVML +AL + DFD ++
Sbjct: 247 LRAQPKANDQYLPPFVIVDDSGNAVGPVLDGDAVVTINFRADRMVMLAKALEYADFDNFD 306

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVRVPKI+YAGMLQYDGELKLPS+YLVS   IDRTSGEYL KNG+RTFA S
Sbjct: 307 RVRVPKIRYAGMLQYDGELKLPSRYLVSPPEIDRTSGEYLVKNGIRTFACS 357



 Score = 81.3 bits (199), Expect(2) = 9e-62
 Identities = 42/81 (51%), Positives = 50/81 (61%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYFD T+EEYVE+             +  L IA + RDA+L G
Sbjct: 358 ETVKFGHVTFFWNGNRSGYFDATKEEYVEVPSDSGITFNVAPNMKALEIAEKARDALLSG 417

Query: 666 KVAQVRINLPKWYVVGAHGGL 728
           K  QVR+NLP   +VG  G +
Sbjct: 418 KFDQVRVNLPNGDMVGHTGDI 438


>sp|Q9M9K1|PMG2_ARATH Probable 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase 2 OS=Arabidopsis thaliana
           GN=At3g08590 PE=2 SV=1
          Length = 560

 Score =  175 bits (444), Expect(2) = 2e-60
 Identities = 87/111 (78%), Positives = 97/111 (87%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           + AEP ANDQYLP FVIVD++GK+VGPIVDGDAVVTFNFRAD MVM  +AL + DFDK++
Sbjct: 248 LRAEPGANDQYLPSFVIVDDNGKAVGPIVDGDAVVTFNFRADRMVMHAKALEYKDFDKFD 307

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVRVP I+YAGMLQYDGELKLPS+YLVS  LIDRTSGEYL  NGVRTFA S
Sbjct: 308 RVRVPDIRYAGMLQYDGELKLPSRYLVSPPLIDRTSGEYLAHNGVRTFACS 358



 Score = 79.0 bits (193), Expect(2) = 2e-60
 Identities = 42/81 (51%), Positives = 49/81 (60%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYF+E  EEYVE+             +  L IA + RDAIL G
Sbjct: 359 ETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIAEKARDAILSG 418

Query: 666 KVAQVRINLPKWYVVGAHGGL 728
           K  QVR+NLP   +VG  G +
Sbjct: 419 KFDQVRVNLPNGDMVGHTGDI 439


>sp|Q42908|PMGI_MESCR 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Mesembryanthemum crystallinum
           GN=PGM1 PE=2 SV=1
          Length = 559

 Score =  176 bits (447), Expect(2) = 9e-60
 Identities = 86/111 (77%), Positives = 97/111 (87%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           +  EPKANDQYLPPFV+VDESGK+VGPIVDGDAVVT NFRAD MVML +AL + DFDK++
Sbjct: 247 LRQEPKANDQYLPPFVVVDESGKAVGPIVDGDAVVTLNFRADRMVMLAKALEYEDFDKFD 306

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVR PKI+YAGMLQYDGELKLP++YLVS   I+RTSGEYL  NGVRTFA S
Sbjct: 307 RVRFPKIRYAGMLQYDGELKLPNRYLVSPPEIERTSGEYLVHNGVRTFACS 357



 Score = 75.9 bits (185), Expect(2) = 9e-60
 Identities = 41/81 (50%), Positives = 47/81 (58%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYF    EEYVE+             +  L IA + RDAIL G
Sbjct: 358 ETVKFGHVTFFWNGNRSGYFKPEMEEYVEIPSDSGITFNVQPKMKALEIAEKARDAILSG 417

Query: 666 KVAQVRINLPKWYVVGAHGGL 728
           K  QVR+NLP   +VG  G +
Sbjct: 418 KFDQVRVNLPNSDMVGHTGDI 438


>sp|O04499|PMG1_ARATH 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase 1 OS=Arabidopsis thaliana
           GN=PGM1 PE=2 SV=3
          Length = 557

 Score =  174 bits (441), Expect(2) = 2e-59
 Identities = 87/111 (78%), Positives = 95/111 (85%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           +  EP ANDQYLPPFVIVDESGK+VGPIVDGDAVVTFNFRAD MVM  +AL + DFDK++
Sbjct: 246 LRKEPGANDQYLPPFVIVDESGKAVGPIVDGDAVVTFNFRADRMVMHAKALEYEDFDKFD 305

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVR PKI+YAGMLQYDGELKLPS+YLVS   IDRTSGEYL  NGV TFA S
Sbjct: 306 RVRYPKIRYAGMLQYDGELKLPSRYLVSPPEIDRTSGEYLTHNGVSTFACS 356



 Score = 76.6 bits (187), Expect(2) = 2e-59
 Identities = 40/81 (49%), Positives = 48/81 (59%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYF+E  EEYVE+             +  L I  + RDAIL G
Sbjct: 357 ETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGISFNVQPKMKALEIGEKARDAILSG 416

Query: 666 KVAQVRINLPKWYVVGAHGGL 728
           K  QVR+N+P   +VG  G +
Sbjct: 417 KFDQVRVNIPNGDMVGHTGDI 437


>sp|P35493|PMGI_RICCO 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2
          Length = 556

 Score =  167 bits (424), Expect(2) = 5e-57
 Identities = 84/111 (75%), Positives = 92/111 (82%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           +  EPKANDQYLPPFVIVDE+GK VGPIVDGDAVVT NFRAD MVML +AL + +FD ++
Sbjct: 244 LREEPKANDQYLPPFVIVDENGKPVGPIVDGDAVVTINFRADRMVMLAKALEYENFDTFD 303

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVR PKI YAGMLQYDGELKLPS YLVS   I+RTSGEYL  NGV TFA S
Sbjct: 304 RVRFPKIHYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVHTFACS 354



 Score = 75.5 bits (184), Expect(2) = 5e-57
 Identities = 39/79 (49%), Positives = 47/79 (59%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYF+   EEYVE+             +  + IA + RDAIL G
Sbjct: 355 ETVKFGHVTFFWNGNRSGYFNPEMEEYVEIPSDVGITFNVQPKMKAIEIAEKARDAILSG 414

Query: 666 KVAQVRINLPKWYVVGAHG 722
           K  QVR+N+P   +VG  G
Sbjct: 415 KFQQVRVNIPNGDMVGHTG 433


>sp|O24246|PMGI_PRUDU 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2
           SV=1
          Length = 488

 Score =  173 bits (438), Expect(2) = 7e-57
 Identities = 85/111 (76%), Positives = 94/111 (84%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           +  EP  +DQYLPPFVIVDE+GK VGPIVDGDAVVTFNFRAD MVM+ +AL + DFDK++
Sbjct: 176 LRQEPNTSDQYLPPFVIVDENGKPVGPIVDGDAVVTFNFRADRMVMIAKALEYADFDKFD 235

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVR PKI+YAGMLQYDGELKLPSKYLV    IDRTSGEYL  NGVRTFA S
Sbjct: 236 RVRFPKIRYAGMLQYDGELKLPSKYLVEPPEIDRTSGEYLTYNGVRTFACS 286



 Score = 69.7 bits (169), Expect(2) = 7e-57
 Identities = 37/76 (48%), Positives = 44/76 (57%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYF+   EEYVE+             +  + IA + R AIL  
Sbjct: 287 ETVKFGHVTFFWNGNRSGYFNPQMEEYVEIPSDSGITFNVQPKMKAVEIAEKGRGAILSK 346

Query: 666 KVAQVRINLPKWYVVG 713
           K  QVR+NLP   +VG
Sbjct: 347 KFEQVRVNLPNSDMVG 362


>sp|P35494|PMGI_TOBAC 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1
          Length = 559

 Score =  157 bits (397), Expect(2) = 5e-55
 Identities = 79/111 (71%), Positives = 91/111 (81%)
 Frame = +2

Query: 152 INAEPKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWE 331
           +  EP ANDQYL PFVIVD++GK V  I+DGDAVVTFNFRAD MVML +AL + +FDK++
Sbjct: 247 LRQEPNANDQYLAPFVIVDDNGKPVAAILDGDAVVTFNFRADRMVMLAKALEYENFDKFD 306

Query: 332 RVRVPKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           RVRVPKI+YAGMLQY GEL+LPS YLVS   I R SGEYL +NGVRTFA S
Sbjct: 307 RVRVPKIRYAGMLQYHGELQLPSHYLVSPPEIARHSGEYLVRNGVRTFACS 357



 Score = 79.3 bits (194), Expect(2) = 5e-55
 Identities = 42/81 (51%), Positives = 48/81 (59%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVELSXXXXXXXXXXXXLVGLFIAGENRDAILRG 665
           ET K GHVTFFWNGNR GYF+E  EEYVE+             +  L IA   RDAIL G
Sbjct: 358 ETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDSGITFNVKPKMKALEIAERTRDAILSG 417

Query: 666 KVAQVRINLPKWYVVGAHGGL 728
           K  QVR+NLP   +VG  G +
Sbjct: 418 KFDQVRVNLPNGDMVGHTGDI 438


>sp|P59173|GPMI_LEPIN Probable 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Leptospira interrogans
           GN=gpmI PE=3 SV=2
          Length = 548

 Score =  103 bits (258), Expect(2) = 2e-30
 Identities = 53/107 (49%), Positives = 72/107 (67%)
 Frame = +2

Query: 164 PKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWERVRV 343
           PK  DQYLP FVI D +GK VG I DGD+VV  NFR D  + +  A    +FDK++R  +
Sbjct: 245 PKIIDQYLPSFVISD-NGKPVGKIQDGDSVVFTNFRGDRAIEISLAFTEKNFDKFDRGPL 303

Query: 344 PKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           P + YAG++QYDG+LKLP ++LV+   IDRT GEY+  + +  +A S
Sbjct: 304 PNVLYAGIMQYDGDLKLPERFLVAPPAIDRTLGEYMASSNIPQYALS 350



 Score = 50.4 bits (119), Expect(2) = 2e-30
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVEL 575
           ET K GHVT+FWNGN+ GYFD+  EEY E+
Sbjct: 351 ETQKYGHVTYFWNGNKSGYFDQNSEEYREI 380


>sp|Q72VB8|GPMI_LEPIC 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Leptospira interrogans
           GN=gpmI PE=3 SV=2
          Length = 548

 Score =  103 bits (258), Expect(2) = 2e-30
 Identities = 53/107 (49%), Positives = 72/107 (67%)
 Frame = +2

Query: 164 PKANDQYLPPFVIVDESGKSVGPIVDGDAVVTFNFRADXMVMLCEALXFPDFDKWERVRV 343
           PK  DQYLP FVI D +GK VG I DGD+VV  NFR D  + +  A    +FDK++R  +
Sbjct: 245 PKIIDQYLPSFVISD-NGKPVGKIQDGDSVVFTNFRGDRAIEISLAFTEKNFDKFDRGPL 303

Query: 344 PKIKYAGMLQYDGELKLPSKYLVSLSLIDRTSGEYLXKNGVRTFAWS 484
           P + YAG++QYDG+LKLP ++LV+   IDRT GEY+  + +  +A S
Sbjct: 304 PNVLYAGIMQYDGDLKLPERFLVAPPAIDRTLGEYMASSNIPQYALS 350



 Score = 50.4 bits (119), Expect(2) = 2e-30
 Identities = 20/30 (66%), Positives = 24/30 (80%)
 Frame = +3

Query: 486 ETGKCGHVTFFWNGNRLGYFDETREEYVEL 575
           ET K GHVT+FWNGN+ GYFD+  EEY E+
Sbjct: 351 ETQKYGHVTYFWNGNKSGYFDQNSEEYREI 380


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit
           11 OS=Mus musculus GN=Psmd11 PE=1 SV=3
          Length = 422

 Score =  385 bits (990), Expect = e-106
 Identities = 205/219 (93%), Positives = 205/219 (93%)
 Frame = +2

Query: 35  MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 214
           MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1   MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60

Query: 215 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 394
           GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61  GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120

Query: 395 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 574
           KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180

Query: 575 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHA 691
           SNLPK              IYCPPKLQATLDMQSGIIHA
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHA 219