miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|282724413|gb|GW280987.1|GW280987 GGGCCGCGGCCGGGGACGGTGTGAAAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTAC
TCAGCACCGACCGGGAGGCCTCCATCGACATTCTCCACTCCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCA
GTGCAGGTCAAAGAGCAGAGTATCCTGGAACTGGGGTCTCTCTTGGGCGAGACTGGACAAGCTGCGGAGCTTGGAGGACT
CCTGAAGTATGTGCGACCCTTCTTGAATTCCATCAGCAAGGCTAAGGCAGCTCGTCTGGTCCGATCTCTTCTTGATCTGT
TTCTTGATATGGAAGCAGCTACAGGGCAGGAGGTCGAGTTGTGTTTAGAGTGCATTGAATGGGCCAAATCAGAGAAGCGA
ACTTTCTTACGCCAAGCTTTGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTT
GGGTTCTCAGCTGCTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAA
CATACCATGCCCTGAGCAACCTGCCGAAAGCCCGAGCTGCCTTAACCTCTGCTCGAACTACAGCAAATGCTATCTACTGC
CCCCCTAAATTGC




Most similar to sp|Q8BG32|PSD11_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P42759|ERD10_ARATH Dehydrin ERD10 OS=Arabidopsis thaliana
           GN=ERD10 PE=1 SV=1
          Length = 260

 Score = 64.3 bits (155), Expect(2) = 4e-22
 Identities = 30/46 (65%), Positives = 34/46 (73%)
 Frame = +2

Query: 491 HSEKPEDSQVVDTAAAVPVTEKTAEHPEEKKGLMEKIKEKXPGYHA 628
           HS+KPEDSQVV+T   V      A+ PEEKKG M+KIKEK PGYHA
Sbjct: 201 HSKKPEDSQVVNTTPLVETATPIADIPEEKKGFMDKIKEKLPGYHA 246



 Score = 62.0 bits (149), Expect(2) = 4e-22
 Identities = 48/153 (31%), Positives = 60/153 (39%), Gaps = 8/153 (5%)
 Frame = +1

Query: 67  HKAQVSEPPAFLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPSLLQKLHRXXXXXXXX 246
           HK Q+SEP +F+A                            NKPSLL KLHR        
Sbjct: 56  HKTQISEPESFVAKHEEEEHKPTLLEQLHQKHEEEEE----NKPSLLDKLHRSNSSSSSS 111

Query: 247 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VMEQIREKFPHGTKTE-DDTPVIATL 411
                                             VM++I+EKFP G K   DD PV+ T+
Sbjct: 112 SDEEGEDGEKKKKEKKKKIVEGDHVKTVEEENQGVMDRIKEKFPLGEKPGGDDVPVVTTM 171

Query: 412 PVKEETVEHP---EEKKGLMEKIKEKLPGSQRE 501
           P      +H    EEKKG M+KIKEKLPG  ++
Sbjct: 172 PAPHSVEDHKPEEEEKKGFMDKIKEKLPGHSKK 204


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit
           11 OS=Mus musculus GN=Psmd11 PE=1 SV=3
          Length = 422

 Score =  358 bits (918), Expect = 2e-98
 Identities = 190/206 (92%), Positives = 191/206 (92%)
 Frame = +2

Query: 35  MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLGET 214
           MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLL +T
Sbjct: 1   MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60

Query: 215 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 394
           GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61  GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120

Query: 395 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 574
           KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180

Query: 575 SNLPKXXXXXXXXXXXXXXIYCPPKL 652
           SNLPK              IYCPPKL
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKL 206