| EST name | EST sequence |
| gi|282729885|gb|GW276993.1|GW276993 | GGGGGACGGTGTGAAAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGA CCGGGAGGCCTCCATCGACATTCTCCACTCCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCAGTGCAGGTCA AAGAGCAGAGTATCCTGGAACTGGGGTCTCTCTTGGCGAAGACTGGACAAGCTGCGGAGCTTGGAGGACTCCTGAAGTAT GTGCGACCCTTCTTGAATTCCATCAGCAAGGCTAAGGCAGCTCGTCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATAT GGAAGCAGCTACAGGGCAGGAGGTCGAGTTGTGTTTAGAGTGCATTGAATGGGCCAAATCAGAGAAGCGAACTTTCTTAC GCCAAGCTTTGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTTGGGTTCTCAG CTGCTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAACATACCATGC CCTGAGCAACCTGCCGAAAGCCCGAGCTGCCTTAACCTCTGCTCGAACTACAGCAAATGCTATCTACCCCCCCCTAAATT GCAGGCCACCTTGGATATGCNGTCAGGTATTATCCNCGCAGCAAAGNANAAGGACTGGAAACTGCGTACTCCTATTTTCT ATGANGCTTTTGAGGGC |
Most similar to sp|Q8BG32|PSD11_MOUSE
>BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit
11 OS=Mus musculus GN=Psmd11 PE=1 SV=3
Length = 422
Score = 350 bits (898), Expect(2) = e-105
Identities = 188/203 (92%), Positives = 188/203 (92%)
Frame = +1
Query: 25 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 204
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 205 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 384
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 385 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 564
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 565 SNLPKXXXXXXXXXXXXXXIYPP 633
SNLPK IY P
Sbjct: 181 SNLPKARAALTSARTTANAIYCP 203
Score = 54.7 bits (130), Expect(2) = e-105
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = +3
Query: 630 PPKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
PPKLQATLDM SGII AA+ KDWK FY AFEG
Sbjct: 203 PPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 238
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit
11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3
Length = 422
Score = 350 bits (898), Expect(2) = e-105
Identities = 188/203 (92%), Positives = 188/203 (92%)
Frame = +1
Query: 25 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 204
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 205 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 384
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 385 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 564
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 565 SNLPKXXXXXXXXXXXXXXIYPP 633
SNLPK IY P
Sbjct: 181 SNLPKARAALTSARTTANAIYCP 203
Score = 54.7 bits (130), Expect(2) = e-105
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = +3
Query: 630 PPKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
PPKLQATLDM SGII AA+ KDWK FY AFEG
Sbjct: 203 PPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 238
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit
11 OS=Bos taurus GN=PSMD11 PE=2 SV=3
Length = 422
Score = 350 bits (898), Expect(2) = e-105
Identities = 188/203 (92%), Positives = 188/203 (92%)
Frame = +1
Query: 25 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 204
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 205 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 384
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 385 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 564
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 565 SNLPKXXXXXXXXXXXXXXIYPP 633
SNLPK IY P
Sbjct: 181 SNLPKARAALTSARTTANAIYCP 203
Score = 54.7 bits (130), Expect(2) = e-105
Identities = 26/36 (72%), Positives = 27/36 (75%)
Frame = +3
Query: 630 PPKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
PPKLQATLDM SGII AA+ KDWK FY AFEG
Sbjct: 203 PPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 238
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit
rpn-6.1 OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 146 bits (369), Expect(2) = 1e-40
Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Frame = +1
Query: 103 LHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAA 282
L ++VK +D+ ++ KE SI+ELG++LA+ Q EL +++ RPFL S+ KAKAA
Sbjct: 43 LTNLVKSPASGDDD--IKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKAKAA 100
Query: 283 RLVRSLLDLFLDMEAATGQ-EVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQE 459
+LVR L+DL L ++ G +V L ECI+WA + RTFLRQ L ARLV LY D +RY +
Sbjct: 101 KLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQNRTFLRQTLTARLVRLYNDLQRYTQ 160
Query: 460 ALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNL 573
AL L + L+RELKK+DDK +LVEV+L ESK Y+ LSN+
Sbjct: 161 ALPLAADLIRELKKVDDKDVLVEVELEESKAYYNLSNI 198
Score = 41.6 bits (96), Expect(2) = 1e-40
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 633 PKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
P++QA LD+ SGI+ AA KD+K FY AFEG
Sbjct: 219 PRMQAALDLQSGILHAADEKDFKTAFSYFYEAFEG 253
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit
rpn6 OS=Schizosaccharomyces pombe (strain ATCC 38366 /
972) GN=rpn6 PE=2 SV=1
Length = 421
Score = 147 bits (370), Expect(2) = 4e-38
Identities = 73/169 (43%), Positives = 113/169 (66%)
Frame = +1
Query: 73 STDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 252
S D E +ID+ ++ + + + DE+ +EQ++ L L + + +L L++ RP
Sbjct: 16 SNDIEKAIDLYKEVLNKGVSK-DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPL 74
Query: 253 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 432
+ + SKAK+A++VR+L+D F + + ++E+ +CI+WA EKRTFLRQALE +L+SL
Sbjct: 75 MANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISL 134
Query: 433 YFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPK 579
Y+D Y +A++L + LL ELK+MDDK LL EV LLESK YHA+ N+PK
Sbjct: 135 YYDNSSYTDAINLINTLLSELKRMDDKMLLTEVHLLESKVYHAIRNIPK 183
Score = 32.7 bits (73), Expect(2) = 4e-38
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 630 PPKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
PP LQ LD+ SGI+ A D+K FY A+EG
Sbjct: 201 PPMLQGNLDLQSGILH-ADDMDFKTAYSYFYEAYEG 235
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit
11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 122 bits (306), Expect(2) = 4e-31
Identities = 68/169 (40%), Positives = 98/169 (57%)
Frame = +1
Query: 127 IQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLD 306
IQE+ ++ +KE++IL L L K G+ +L LL+ VRPF + ISK K ++VR+ +D
Sbjct: 29 IQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFID 85
Query: 307 LFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLL 486
+F + +E E I+W K R +LRQ LE +L +L F+ K Y AL + LL
Sbjct: 86 IFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLL 145
Query: 487 RELKKMDDKALLVEVQLLESKTYHALSNLPKXXXXXXXXXXXXXXIYPP 633
E+K++DDK LLVE+QL+ES+ HAL N+PK IY P
Sbjct: 146 TEIKRLDDKPLLVEIQLVESRIQHALKNIPKARAALTSARTNANTIYCP 194
Score = 33.9 bits (76), Expect(2) = 4e-31
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 630 PPKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFE 734
PPKLQA +DM SGI+ ++ KD+K F+ ++E
Sbjct: 194 PPKLQAEIDMQSGILH-SEEKDYKTAFSYFFESYE 227
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit
rpn-6.2 OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 105 bits (263), Expect(2) = 3e-28
Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
Frame = +1
Query: 133 ENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLF 312
++ E V+ E IL LAK + L+K ++ F + + KA+A++L+R +++
Sbjct: 21 KSSEAEVKRCEDLILSYAKQLAKEKDITGIRTLVKSIQNFYDLVGKARASKLIRDIVEFA 80
Query: 313 LDMEAATGQE---VELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQL 483
L +E ++ ++L CIEWA S KR FLR++L+ARLV LY D + + E LG +L
Sbjct: 81 LTVEQGKQEKEEKIDLLKNCIEWATSNKREFLRRSLQARLVRLYNDVREFTEGQKLGQEL 140
Query: 484 LRELKKMDDKALLVEVQLLESKTYHALSNLPK 579
+ELKK++D+ LL+EV + ESK L+NL K
Sbjct: 141 SKELKKLEDRELLIEVSIEESKCAFNLNNLSK 172
Score = 40.4 bits (93), Expect(2) = 3e-28
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 633 PKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
P+LQA +DM SG++ +A+ +D+K FY AFEG
Sbjct: 191 PQLQAAVDMQSGVLYSAEERDYKTSFSYFYEAFEG 225
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit
rpn-6.2 OS=Caenorhabditis elegans GN=rpn-6.2 PE=2 SV=3
Length = 416
Score = 99.8 bits (247), Expect(2) = 2e-26
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Frame = +1
Query: 91 SIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISK 270
++ + S V ++ E V+ E IL LAK + L++ +R F + + K
Sbjct: 7 TLKAVQSEVSAQTAKSSEAEVKRCEDLILSYSRQLAKEKDITGIRTLVESIRSFYDLVGK 66
Query: 271 AKAARLVRSLLDLFLDMEAATG--------QEVELCLECIEWAKSEKRTFLRQALEARLV 426
A+A++L+R +++ L ++ G ++++L CI WA S KR FLR++L+ARL+
Sbjct: 67 ARASKLIRDIVEHALTIDQGVGPALDHGKKEKIDLLTNCIGWATSNKREFLRRSLQARLI 126
Query: 427 SLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPK 579
LY D + + A L L +ELKK++D+ LL+EV + ESK+ L+NL K
Sbjct: 127 RLYNDIRDFTNAQKLAQDLSKELKKLEDRELLIEVSVEESKSSFNLNNLAK 177
Score = 40.8 bits (94), Expect(2) = 2e-26
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +3
Query: 633 PKLQATLDMXSGIIXAAKXKDWKLRTPIFYXAFEG 737
P+LQA++DM SG++ +A+ +D+K FY AFEG
Sbjct: 196 PQLQASVDMQSGVLYSAEERDYKTSFSYFYEAFEG 230
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPN6 PE=1 SV=3
Length = 434
Score = 108 bits (271), Expect = 3e-23
Identities = 58/165 (35%), Positives = 95/165 (57%)
Frame = +1
Query: 139 DEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLD 318
D++ +E SILELG L G +L + + ++ +K+K +++++L++ F
Sbjct: 47 DDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ 106
Query: 319 MEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELK 498
+ + ++ +C + IE+AK EKR FL+ +L +L +L++ K+Y+++L L + LLRE K
Sbjct: 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166
Query: 499 KMDDKALLVEVQLLESKTYHALSNLPKXXXXXXXXXXXXXXIYPP 633
K+DDK LV+V LLESK YH L NL K IY P
Sbjct: 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211