miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|282735639|gb|GW291189.1|GW291189 CGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGCCGCATAACTTCGTATAGCATACATTATACGAAG
TTATCAGTCGACGGTACCGGACATATGCCCGGGAATTCGGCCATTACGGCCGGGGGACGGTGTGAAAGCGGTAAGATGGC
GGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATTCTCCACT
CCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGGGGCAGTGCAGGTCAAAGAGCAGAGTATCCTGGAACTGGGGTCT
CTCTTGGCGAAGACTGGACAAGCTGCGGAGCTTGGAGGACTCCTGAAGTATGTGCGACCCTTCTTGAATTCCATCAGCAA
GGCTAAGGCAGCTCGTCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAGGTCGAGT
TGTGTTTAGAGTGCATTGAATGGGCCAAATCAGAGAAGCGAACTTTCTTACGCCAAGCTTTGGAGGCAAGACTGGTGTCT
TTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTTGGGTTCTCAGCTGCTGCGGGAGTTGAAAAAGATGGATGA
CAAAGCCCTTCTGGTGGAAGTACAGCTTTTAGAAAGCAAAACATACCATG




Most similar to sp|Q8BG32|PSD11_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit
           11 OS=Mus musculus GN=Psmd11 PE=1 SV=3
          Length = 422

 Score =  334 bits (856), Expect = 4e-91
 Identities = 177/178 (99%), Positives = 177/178 (99%)
 Frame = +3

Query: 156 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEGAVQVKEQSILELGSLLAKT 335
           MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDE AVQVKEQSILELGSLLAKT
Sbjct: 1   MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60

Query: 336 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 515
           GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61  GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120

Query: 516 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYH 689
           KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYH
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYH 178