miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|282759284|gb|GW309282.1|GW309282 GGACGGTGTGAAAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGACCG
GGAGGCCTCCATCGACATTCTCCACTCCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCAGTGCAGGTCAAAG
AGCAGAGTATCCTGGAACTGGGGTCTCTCTTGGCGAAGACTGGACAAGCTGCGGAGCTTGGAGGACTCCTGAAGTATGTG
CGACCCTTCTTGAATTCCATCAGCAAGGCTAAGGCAGCTCGTCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATATGGA
AGCAGCTACAGGGCAGGAGGTCGAGTTGTGTTTAGAGTGCATTGAATGGGCCAAATCAGAGAAGCGAACTTTCTTACGCC
AAGCTTTGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTTGGGTTCTCAGCTG
CTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAACATACCATGCCCT
GAGCAACCTGCCGAAAGCCCGAGCTGCCTTAACCTCTGCTCGAACTACAGCAAATGCTATCTACTGCCCCCCTAAATTGC
AGGCCACCTTGGATATGCAGTCAGGTATTATCCACGCAGCAGAAGGAGAAGGACTGGAAAACTGCGTACTCCTATTTCTA
TGAGGCATTTTGAGGGGCTATGACTCCATCGAATAGCCCCCAAGGGCCATCACATCTCTGAAGTAACATGTT




Most similar to sp|Q8BG32|PSD11_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit
           11 OS=Mus musculus GN=Psmd11 PE=1 SV=3
          Length = 422

 Score =  402 bits (1033), Expect = e-111
 Identities = 220/254 (86%), Positives = 224/254 (88%)
 Frame = +1

Query: 22  MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 201
           MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1   MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60

Query: 202 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 381
           GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61  GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120

Query: 382 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 561
           KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180

Query: 562 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEGEGLENCVLLFL*GILRGY 741
           SNLPK              IYCPPKLQATLDMQSGIIHAAE +  +     F      GY
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFY-EAFEGY 239

Query: 742 DSIE*PPRAITSLK 783
           DSI+  P+AITSLK
Sbjct: 240 DSID-SPKAITSLK 252