miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|29304853|gb|CB493627.1|CB493627 CATTGTAACACTACAAGTCATTCATTTTATTGAACAGTATCTTAAGAAAAACAGTACACGCAGTGTTGATCATTTTCATA
CAAAATAGTAGGAGTTGGTAGAGATGAGGGAGAGGAGCTTTAATCCATTCTGGCCTTCAGGGTACGTGTGGTGATCTTGT
CCTTCTCAATGACTTGCACAATGACACCCATGCCTGAAACGGCATCCCTGTCCACTGCATTCAGCATGGCTTGGGAGATG
GTCTCAAACAGGTCCTCTGGTTCCATGTCTGGCTCCCAGAGAGATTCACACATGCCGTACATCTGCTCTGAGCAAGTGCC
GCTCACAACAAAGTCCTCTGTCACCATGGGGCAGCCAATCAGGTCCAGCGAGCAGATAAATGGCTCAAAGGTCTTGGGGT
CCAGCCCAGCGATCACAGGCTCAATGTAGTATGGTCCAAATCTCCTCTCATACAGCAGGTTGGAGACCATGCTCATGAAT
GTCTTGGGTTTGATCTGACGCCCCTCCTTCAGCTCATAGAGGTTCAATCTGAACTTGAGCCTCTGGGAAACTGTCTGTAC
GTCAGTAGCCAGGCCAGCCAGGCCAATGTAGAGTCTGTCTCCCATGGGAAAGATCTTCTGGAAGTCTGTGGTCACCATCT
GAGCCTGTACACCGAATCTTCGATCTGCTGCAATGGCTACACATTGCTTACCCTTCATCGCCATGACGGCACCACCATTA
TAGGACATAATAGACATTGTGAATACGTTGAGGTATCTTCCT




Most similar to sp|O73817|PSB3_ONCMY

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus
           mykiss GN=psmb3 PE=2 SV=1
          Length = 205

 Score =  410 bits (1055), Expect = e-114
 Identities = 204/205 (99%), Positives = 205/205 (100%)
 Frame = -2

Query: 737 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 558
           MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV
Sbjct: 1   MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 557 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 378
           QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF
Sbjct: 61  QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120

Query: 377 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 198
           ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180

Query: 197 SGMGVIVQVIEKDKITTRTLKARMD 123
           SGMGV+VQVIEKDKITTRTLKARMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205