miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|29549172|gb|CB609559.1|CB609559 CCACGCGTCCGGCATCACTGGTGTCCGGGGTCGTGAAGGGAAGCCTGGCAGTCAGGGTGAGAAGGGCCAGAGGGGAGCTA
AGGGTGCCAAGGGCTACCAAGGACAGCTGGGAGAGATGGGCATCCCTGGAGACCCTGGCCCCCCTGGCACCCCAGGTCCT
AAAGGGTCCCGGGGCACCCTAGGACCAATGGGTGCTCCAGGACGGATGGGAGCCCAAGGAGAACCAGGATTGGCTGGTTA
TAATGGGCATAAAGGCATCACGGGACCTCTCGGGCCTCCCGGGCCCAAAGGCGAGAAGGGGGAACAGGGCGAGGATGGCA
AGACTGAGGGGGCCCCCGGGCCACCAGGAGAGCGGGGTCCTGTGGGTGATCGAGGAGACCGTGGGGAGCCAGGCGACCCT
GGATACCCTGGTCAAGAGGGTGTTCAAGGCCTCCGTGGAGAACCAGGCCAGCAGGGCCAGCCCGGGCATCCAGGACCCCG
GGGACGCCCAGGACCCAAAGGATCAAAAGGCGAAGAGGGCCCAAAGGGAAAGCCAGGCAAGGCGGGGGCATCAAGCCGGA
A




Most similar to sp|Q80ZF0|CORA1_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q80ZF0|CORA1_RAT Collagen alpha-1(XXVII) chain OS=Rattus
          Length = 1855

 Score =  117 bits (292), Expect = 6e-26
 Identities = 58/80 (72%), Positives = 58/80 (72%)
 Frame = +2

Query: 11   GITGVRGREGKPGSQGEKGQRGAKGAKGYQGQLXXXXXXXXXXXXXXXXXXXXXXTLGPM 190
            GITGVRGREGKPGSQGEKGQRGAKGAKGYQGQL                      TLGPM
Sbjct: 1228 GITGVRGREGKPGSQGEKGQRGAKGAKGYQGQLGEMGIPGDPGPPGTPGPKGSRGTLGPM 1287

Query: 191  GAPGRMGAQGEPGLAGYNGH 250
            GAPGRMGAQGEPGLAGYNGH
Sbjct: 1288 GAPGRMGAQGEPGLAGYNGH 1307