miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|29659515|gb|CB655790.1|CB655790 GATCAGAGAAGGGCCCAATTCGAGGTGGCCCACATAACCTATCACAGGCCCACGACCCATGACGGTCCACTGTTATTGCT
CCATCGATGGCGCACACGCCAAAACGGAAGAAAATATACAGTGGACCATATATGTTGTGGAAACTACCGTTAGATCGAGA
AATAAATGTTCGAGAATCATCCACGTTATCACGCACAGTAAAATTTTTACTCACGAGTAAATCTGTGAGTAAAATTTTTA
CTCGTGATGACGTGAACAAATCTCAAGCGTCTATTATTTAATCTAACGGTAGTTTTCAAGTTTCCATCGTGTACGTGGTT
TCCACCCCCATATTTTCCCCAAAACGGCGCACACCAAACGCCTCTCCTTGCACGGTTACACACAATGACACGCAAGCACG
TTGACACGAAGGCTACATAGCTAGGAGCCTAGGACGACGCAGCGGCGGCGGCGGCAGCGTGCATTGTGCCGGCGACGTCG
ACGACGAAGCGGTACCTCACGTCGTTCCTCTCGAGGCGGCCGAGGGCGGCGTTGACGGCGTCCATGGCGACCACCTCGAC
GTCCGCGGCGATGCCGTGCTCGCCGGCGAAGTCCAGCATCGCCTGGCACTCGGCCACGCTGCCCACGCCGTTCCCGGCGA
CGCGCTTCCCGCCCTCGATGATGGCGTACGCGGGCAGCTGCAGCGGCATCGCCGGCGCGCCCACCACCACCATCTGCCCC
TTGGGCTTCAGCAGCGACAGCAGCGGCACCAGCGGGTGCCCCGCGGACACCGTGTCGATGATCCCGTCCATCGTCGCCGC
CGCCGCCG




Most similar to sp|Q6ERW5|CAD8D_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6ERW5|CAD8D_ORYSJ Probable cinnamyl alcohol dehydrogenase 8D
           OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1
          Length = 362

 Score =  168 bits (426), Expect = 4e-41
 Identities = 91/116 (78%), Positives = 91/116 (78%)
 Frame = -3

Query: 806 AAAATMDGIIDTVSAGHXXXXXXXXXXXKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNG 627
           AAAATMDGIIDTVSAGH           KGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNG
Sbjct: 238 AAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNG 297

Query: 626 VGSVAECQAMLDFAGEHGIXXXXXXXXXXXXXXALGRLERNDVRYRFVVDVAGTMH 459
           VGSVAECQAMLDFAGEHGI              ALGRLERNDVRYRFVVDVAGTMH
Sbjct: 298 VGSVAECQAMLDFAGEHGIAADVEVVAMDAVNAALGRLERNDVRYRFVVDVAGTMH 353