miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|297760928|gb|FN880640.1|FN880640 GGCAGAAGCACTGTCGAGGTGGCAGGAGGGGCTCAATCGGATCGAGGCGGCTCCGTTCCACTTCTTCACACTTGATAATA
ATTCGGATGTCGGAGTGCCGAGCGCAGTGGGATCCGAGCACACAAAGACTGAACTCCGATTGTGTTCGATGACTGGTGCA
AACAGATTGATCCACCTCCTGCATTCATGAAAGAAATGCCCGGGGGTGGATAATCTAACGACATTCTTGAAGCGTTACAG
TCTATGATTTACGATTCCGGAGACCACCAGCATGAGCTTATGAGTGCTGAATATCCCTGCGAGGAAGGAGATCCGCATTT
CAAATTTAAGAAGTATAGATGGGCGACTGATTGCTATTCTAATGGCATCAAAGAAAATTCACCTGATAGGAAATTGAACG
CTGTGCTCTATTTCAACCGAGCCGCAGCTCAAAAACATCTCGGTAATCTTCGATCTGCAATTAAAGACTGCTCGATGGGA
CGGAAGTTTGATCCAACTCATCTGAAAGGTGTAATTCGAGGAGCCGAATGTCTTCTGGAATTGGAATATGCAAAAGACGC
GCTGAATTGGATTGAAAGCAGCAAAAAGATTTTCGCATTCACGATAGAAACTTCTGACACTCCGGATCTTACTGATGATG
AGAAAAAATTCATAGATCATTTGGAAACACTTCGAGTAAAATCAGTTGAGCTGTCATTTGAAGAAGAAGAGATAAAAGAA
ATCCAGAGCCGGAGAAGAAAAGGACGGAATCGAGAAACACTTGTAGATGCCTCAAGAACG




Most similar to sp|Q8R3H9|TTC4_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8R3H9|TTC4_MOUSE Tetratricopeptide repeat_field protein 4 OS=Mus
           musculus GN=Ttc4 PE=2 SV=1
          Length = 386

 Score =  114 bits (285), Expect = 8e-25
 Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
 Frame = +1

Query: 148 DDWCKQIDPPPAFMKEMPGGG*SNDI--LEALQSMIYDSGDHQHELMSAEYPCEEGDPHF 321
           D W ++ D  P FMK+ P      +   L  LQSMI+D   +  E   A+   +EG+ +F
Sbjct: 33  DQWEEEFDKIPLFMKKAPSEIDPEEFPDLACLQSMIFDDDRYPEE--QAKTYKDEGNDYF 90

Query: 322 KFKKYRWATDCYSNGIKENSPDRKLNAVLYFNRAAAQKHLGNLRSAIKDCSMGRKFDPTH 501
           K K Y+ A   YS G+K+   D  LNAVLY NRAAAQ +LGN+RS++ D    +K  P H
Sbjct: 91  KEKDYKKAVLSYSEGLKKKCADPDLNAVLYTNRAAAQYYLGNVRSSLNDVLAAKKLKPGH 150

Query: 502 LKGVIRGAECLLELEYAKDALNWIESSKKIFA 597
           LK +IRGA C LEL++  +A+NW +   +I A
Sbjct: 151 LKAIIRGALCHLELKHFAEAVNWCDEGLQIDA 182