miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|298628569|gb|FQ114520.1|FQ114520 AACCCGCGGGGCCGGGCGGGCGGGCGGCGGCAAGGCAGGAGCAGCTCGGAGCAGCGCGCTGTCCTAGGAAGATTAGTGTC
ACCGCCTTTCCCCCTGCCTCTGGGTGCCAAGCCTGCAGCCTGCCCGTCAGCCCCAGCTCCAGCTGATCCCCCACCATCCA
GGTCGCCTGCAGCCTGTAACTACCCACTGTGTTGGTTACAGCAGTCATCTATCCCGTGCGCCCTGAAGCCAGCTCTGTAC
AGTTTCGTTTCTGATCTCTCCAGAGCCCAAGCAGAGTAGACCCCTGTCCAGCCTAGTGACCTTCGCCTGAGCGCTGGTTA
ATATTTGACCAAAGGCGGTGGGGCTCCTCCCCCTGGGAAGATATAAGCTGGTCTGGGGCTACTCTGCTTTCTTCTTGGCC
TGAGCTGTTCCGAGCTCCCTGCCCACCAGCATCATGGCCAAGGGTTTCTACATTTCCAAGACCCTGGGCATCTTGGGCAT
CCTGTTAGGTGTGGCAGCCGTATGCACCATCATAGCTCTGTCGGTGGTCTACGCTCAGGAGAAGAACAGGAATGCGGAGA
ACTCTGCCATAGCCCCCACGCTCCCAGGCAGCACCTCAGCCACCACCTCAACTACCAACCCTGCTATAGATGAAAGCAAA
CCTTGGAACCAGTATCGCTTGCCTAAGACTCTTATACCCGACTCCTACCAGGTGACCTTGAGGCCTTACCTCACCCCCAA
CGAGCAGGGCCTGTACATCTTCAAAGGTTCCAGTACTGTCCGCTTTACCTGCACCAGACCACAAATGTCATCATCATCCA
CAGC




Most similar to sp|P15684|AMPN_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           PE=1 SV=2
          Length = 965

 Score =  166 bits (419), Expect(2) = 9e-41
 Identities = 86/113 (76%), Positives = 86/113 (76%)
 Frame = +2

Query: 434 MAKGFYISKTXXXXXXXXXVAAVCTIIALSVVYAQEKNRNAENSAIXXXXXXXXXXXXXX 613
           MAKGFYISKT         VAAVCTIIALSVVYAQEKNRNAENSAI              
Sbjct: 1   MAKGFYISKTLGILGILLGVAAVCTIIALSVVYAQEKNRNAENSAIAPTLPGSTSATTST 60

Query: 614 XXXXIDESKPWNQYRLPKTLIPDSYQVTLRPYLTPNEQGLYIFKGSSTVRFTC 772
               IDESKPWNQYRLPKTLIPDSYQVTLRPYLTPNEQGLYIFKGSSTVRFTC
Sbjct: 61  TNPAIDESKPWNQYRLPKTLIPDSYQVTLRPYLTPNEQGLYIFKGSSTVRFTC 113



 Score = 22.7 bits (47), Expect(2) = 9e-41
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 772 HQTTNVIIIHS 804
           ++TTNVIIIHS
Sbjct: 114 NETTNVIIIHS 124


>sp|P97449|AMPN_MOUSE Aminopeptidase N OS=Mus musculus GN=Anpep PE=1
           SV=4
          Length = 966

 Score =  155 bits (392), Expect = 3e-37
 Identities = 79/115 (68%), Positives = 84/115 (73%)
 Frame = +2

Query: 434 MAKGFYISKTXXXXXXXXXVAAVCTIIALSVVYAQEKNRNAENSAIXXXXXXXXXXXXXX 613
           MAKGFYISKT         VAAVCTIIALSVVYAQEKNRNAENSA               
Sbjct: 1   MAKGFYISKTLGILGILLGVAAVCTIIALSVVYAQEKNRNAENSATAPTLPGSTSATTAT 60

Query: 614 XXXXIDESKPWNQYRLPKTLIPDSYQVTLRPYLTPNEQGLYIFKGSSTVRFTCTR 778
               +DESKPWNQYRLPKTLIPDSY+V LRPYLTPN QGLYIF+G+STVRFTC +
Sbjct: 61  TTPAVDESKPWNQYRLPKTLIPDSYRVILRPYLTPNNQGLYIFQGNSTVRFTCNQ 115