miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|299874835|gb|FR612166.1|FR612166 GCCTGCATACACTTTATTTAAGCAGGAGAACCGATATATACATGTTGATACAACAATTTAAATTTACTACAAATTTGGTA
GCATACGGTGAGGAGACAGACAGTATGGCAACGGATAGGCTTAGTAGTCAAAACTAATCAAATGGGAAGGGCTTTTTGAC
AAACCATGAAAGGTTTACCAGAATCTTGTCGACATATCTATGCACAATTGAGGTGCCCGTGCCAATAATCTTTCGAGAAA
CTGGAAAGTTAGGTCGCATGGCTTTTATCTGCCAATGACCCTCTTTGCCTTTCCTTCCTAGTTTTAAATTCCAGGTCAAT
GCGGAAATAAGATTTATTGCGCTCTCTAACATAGTGGACCTGACCATTCATCCCGTTGAGAAGTTTCCGAGACAGGTTGA
GCCCTAAGCCTTCCTGTGTTGTCCACTGGTTTCCTCCCTCAAACATATCTTGGATAAGAGCAGAAGGAAGGCCTTGACCA
GGGTGAGTCATTCTGAATTGTAAACGGATAAATTCATTGCCATCCTGTATAATCTTCAGACCGGGTGAAATTTTGATTTC
CACCCAGCCATCTGGAGAAGGTGCATGATGTACCACATTAAGCAAGAAATCTGACAAGACCAGTTGAAGCCTAATTTGAT
CACCAT




Most similar to sp|P55004|PHYE_IPONI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P55004|PHYE_IPONI Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1
          Length = 1115

 Score =  195 bits (496), Expect = 2e-49
 Identities = 92/126 (73%), Positives = 108/126 (85%)
 Frame = -3

Query: 644  GDQIRLQLVLSDFLLNVVHHAPSPDGWVEIKISPGLKIIQDGNEFIRLQFRMTHPGQGLP 465
            GDQI+LQLVLSDFLL++V HAPSPDGWVEI++SPGLK+IQDGN FI +QFRMTHPGQGLP
Sbjct: 986  GDQIKLQLVLSDFLLSIVRHAPSPDGWVEIRVSPGLKLIQDGNVFIHIQFRMTHPGQGLP 1045

Query: 464  SALIQDMFEGGNQWTTQEGLGLNLSRKLLNGMNGQVHYVRERNKSYFRIDLEFKTRKERQ 285
            SALI+DM  GG +WTTQEG+ L+LS+KL+  MNG VHYVRE+ K YF IDL+FKT+K R 
Sbjct: 1046 SALIEDMVRGGTRWTTQEGVVLHLSQKLVRMMNGHVHYVREQQKCYFLIDLDFKTQKPRS 1105

Query: 284  RGSLAD 267
            R S  D
Sbjct: 1106 RESSMD 1111