miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|305639254|gb|GD255927.1|GD255927 TTGAAGACAATAAAAGATTAAAAAGAAGAAACCTCCCTCACACTTTATAGGCTAGTGCAAAAGTAATTGCGGTTATTTGC
CATTAAAAGTAATTGCAAAAACTGCAATTACTTTTGCATCAACCTAATACATCTTTTAATAGCAGACTAATGAAAATTAT
ATGGTAAATGCTAAACTTCTCACACTCATTCTGTATGCATTATAAGAATCCTCATTTTTAAAAATTTTACTTTATTTTAT
TTTATTTTTTAAGATGGAGTCTCGCTGTGTCACCCAGGCTGGAGTTCAGTGGCGCGATCTGTGCTCACTGCAACCTCCAC
CTCCTGGATTCAAGCGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTGCGCCACCATGCCCGGCTAAT
TTTTGTATTTTTAGTGGAGACAGGGTTTCACCATATTGGCCAGGCTGGTCTCACAACCCTGACCTTGTGATCCGCCTGCC
TCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGTAAAATTTT




Most similar to sp|Q6B4Z3|UTY_PANTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6B4Z3|UTY_PANTR Histone demethylase UTY OS=Pan troglodytes GN=UTY
            PE=2 SV=1
          Length = 1079

 Score = 79.7 bits (195), Expect(3) = 4e-22
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = +2

Query: 275  QAGVQWRDLCSLQPPPPGFKRFFCLSLPSSWDYRCAPPCPANFCIF 412
            +AG+QW DL SLQPPPPGFKRF  LSLP+SW+YR  P CP NFCIF
Sbjct: 995  RAGMQWCDLSSLQPPPPGFKRFSHLSLPNSWNYRHLPSCPTNFCIF 1040



 Score = 33.1 bits (74), Expect(3) = 4e-22
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +3

Query: 402  FVFLVETGFHHIGQAGLTTLT 464
            F   VETGFHH+GQA L  LT
Sbjct: 1037 FCIFVETGFHHVGQAHLELLT 1057



 Score = 32.0 bits (71), Expect(3) = 4e-22
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 478  ASASQSAGITGVSHRAQ 528
            ASASQSAGITGVSH A+
Sbjct: 1063 ASASQSAGITGVSHHAR 1079


>sp|Q86U02|CN165_HUMAN Putative uncharacterized protein C14orf165
           OS=Homo sapiens GN=C14orf165 PE=4 SV=1
          Length = 117

 Score =  100 bits (249), Expect = 5e-21
 Identities = 47/61 (77%), Positives = 48/61 (78%)
 Frame = +2

Query: 269 VTQAGVQWRDLCSLQPPPPGFKRFFCLSLPSSWDYRCAPPCPANFCIFSGDRVSPYWPGW 448
           V Q GV W +L SLQP PPGFKRF CLSLPSS DYR APPC ANF IFSGDRVSP WP W
Sbjct: 57  VAQTGVHWCNLGSLQPLPPGFKRFSCLSLPSSLDYRHAPPCLANFYIFSGDRVSPCWPDW 116

Query: 449 S 451
           S
Sbjct: 117 S 117