miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|308718577|gb|DK467636.1|DK467636 GGTGTTGTGTCTGATGAGATCTCGGCATCTCTCCTCCTCCGCCTGTAAGCGCCGCATAGACATCGACACTCGCAAAGAGA
CTGAAAGAGTAAATATTATTCCAAGGAGAGATTTCCTCGGAGGTAAAATTTATTATTATTATTATTATTATTATCGTAGT
TTTAATTTGATGAATATCCATTTTTTGTGATTCATAAAATACGATAAAATTTTGGATGAAGAAAGGAAATCGTTGGAACT
TCCTTTTCCTTAAGGGAAAGAATCTGAATCGAAATTTCCAGATTCTTGTGTGATCGTGTGTATATAATAATAATAATAAT
AATAATAATGATAAATTAGATACGAGGAGGTACAATGTTCAAAAGACATGGCTCGAGTGTGGAATTGCTTCCAGACGATG
TTGTAGAGCTGATACTGGAGAGACTTCCGGTGAAATCTCTGCTGAGATTCAGGTCTGTGTCCAAGAAGTGGAAATCGGAA
ATCGATTCCCCAAGTTTCCAGGAAAGACAGTTGATCCGTCGCAGGCAATCACGAGGTCCAGATGCCCTTTTCGTCACCAC
TTATTACTTTGCTGATGATGGTCTGGACACAGATGCTCGAAGGTTTGTGTTTGGGTCATCAATAGCTTATACGGTCAGGT
TCCCTACTTTGGGCAGTTCGGTCTGCCATGGTACTTGTGACGGTCTGGTGTGCCTCTACTCTGTTTTCGATCCGAGGGTC
AACGTCGTGGTGAATCCTGCCACTAGATGGGATCAAACTTTTCCTCTTTCCACCATTCAACGCTTCATAAACGACATGTC
TGAAAACCACGTGTTTTTCACACCTCCTAAGCTTGGATTCGGTAAAGACAAACTCACCG




Most similar to sp|Q7X7A9|FB4_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana
           GN=At1g11270 PE=1 SV=1
          Length = 312

 Score =  184 bits (466), Expect = 9e-46
 Identities = 100/168 (59%), Positives = 124/168 (73%), Gaps = 3/168 (1%)
 Frame = +1

Query: 361 KRHGSSVE--LLPDDVVELILERLPVKSLLRFRSVSKKWKSEIDSPSFQERQLIRRRQSR 534
           KRH SSV   LLP DVV LILERLPV+SLLRF+ VS +WKS I+S  FQERQLIRR +SR
Sbjct: 24  KRHCSSVVKLLLPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIRRMESR 83

Query: 535 GPDALFVTTYYFADDGLDTDARRFVFGSSIAYTVRFPTLGSSVCHGTCDGLVCLYSVFDP 714
           GPD L V+   FADD  D   R+ VFGSSI  T RFPTL + +C+G+C+GL+C+Y V+ P
Sbjct: 84  GPDVLVVS---FADDE-DKYGRKAVFGSSIVSTFRFPTLHTLICYGSCEGLICIYCVYSP 139

Query: 715 RVNVVVNPATRWDQTFPLSTIQRFINDMSENHVF-FTPPKLGFGKDKL 855
             N+VVNPAT+W ++ PLS +Q+F++D  E   + F  PKL FGKDKL
Sbjct: 140 --NIVVNPATKWHRSCPLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKL 185