miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|30966889|gb|CD223455.1|CD223455 TTCCACGTGGAGGAGTACTCGAACCCCGTCTACTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCA
GGTGGACCTGATGGAGTCCAAGACGGCGCACGGGCCCCCGACGGGGCGGTGGACGCCCATGCGCGAGTCCTGGGGATCCA
TCTGGCGGATGGACACCAACCACCGCATGCAGCCGCCCTTCTCCATCCGCATCCGCAACGAGTCCGGCAAGACGCTCGTC
GCCAGAAACGTCATCCCGGCCAACTGGAGGCCCAACACTTTCTACCGCTCCTTCGTCCAGTACCAGTAGTAGCACGTACG
TACCTGATTGATTGATTGATTGATTGGATCCCAGCCCAGCCCGGCCCAGCCCGCAATTGGAGTGGAATCCGGCTCGGTTC
GGTTCGGTTCGGTCATCATCATCACTACGTACGTACTATACGCTACTACCACTAGACGACTACTACTGCTACCAAGTACG
GCGAAACGGAACGGCTAGTCGTTGTGTCTCTGGTCATCGTGTCGTTGCAGTTGTATCATGGTCCTTGGAGTGAGTCGTTG
CATGCATTGGGGGCGCGCTTTTAGGTCAGGCGTCATGTGCGAGTGTTTGTGGGTCTGTAAGGCTGGCATGTGCATGGTGC
GTGACC




Most similar to sp|Q94LR4|EXPB4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94LR4|EXPB4_ORYSJ Expansin-B4 OS=Oryza sativa subsp. japonica
           GN=EXPB4 PE=2 SV=1
          Length = 286

 Score =  212 bits (539), Expect = 2e-54
 Identities = 97/101 (96%), Positives = 99/101 (98%)
 Frame = +1

Query: 1   FHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRMDTN 180
           FHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWR+DTN
Sbjct: 185 FHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTN 244

Query: 181 HRMQPPFSIRIRNESGKTLVARNVIPANWRPNTFYRSFVQY 303
           HR+Q PFSIRIRNESGKTLVA NVIPANWRPNTFYRSFVQY
Sbjct: 245 HRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQY 285