miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|30970983|gb|CD227549.1|CD227549 GAAGATCGGTTTCCACGTGGAGGAGTACTCGAACCCCGTCTACTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCG
ACGTGGTGCAGGTGGACCTGATGGAGTCCAAGACGGCGCACGGGCCCCCGACGGGGCGGTGGACGCCCATGCGCGAGTCC
TGGGGATCCATCTGGCGGATGGACACCAACCACCGCATGCAGCCGCCCTTCTCCATCCGCATCCGCAACGAGTCCGGCAA
GACGCTCGTCGCCAGAAACGTCATCCCGGCCAACTGGAGGCCCAACACTTTCTACCGCTCCTTCGTCCAGTACCAGTAGT
AGCACGTACGTACCTGATTGATTGATTGATTGATTGGATCCCAGCCCAGCCCGGCCCAGCCCGCAATTGGAGTGGAATCC
GGCTCGGTTCGGTTCGGTTCGGTCATCATCATCACTACGTACGTACTATACGCTACTACCACTAGACGACTACTACTGCT
ACCAAGTACGGCGAAACGGAACGGCTAGTCGTTGTGTCTCTGGTCATCGTGTCGTTGCAGTTGTATCATGGTCCTTGGAG
TGAGTCGTTGCATGCATTGGGGGCGCGCTTTTAGGTCAGGCGTCATGTGCGAGTGTTTGTGGGTCTGTAAGGCTGGCATG
TGCATGGTGCGTGACC




Most similar to sp|Q94LR4|EXPB4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94LR4|EXPB4_ORYSJ Expansin-B4 OS=Oryza sativa subsp. japonica
           GN=EXPB4 PE=2 SV=1
          Length = 286

 Score =  218 bits (554), Expect = 4e-56
 Identities = 100/104 (96%), Positives = 102/104 (98%)
 Frame = +2

Query: 2   KIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRM 181
           KIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWR+
Sbjct: 182 KIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRL 241

Query: 182 DTNHRMQPPFSIRIRNESGKTLVARNVIPANWRPNTFYRSFVQY 313
           DTNHR+Q PFSIRIRNESGKTLVA NVIPANWRPNTFYRSFVQY
Sbjct: 242 DTNHRLQAPFSIRIRNESGKTLVANNVIPANWRPNTFYRSFVQY 285