miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|31384964|gb|CD463696.1|CD463696 GACAAGACCAAGTACACCGGCATTGGGTCTGCCATTGAGTACGCCGTGTGCGCCCTCAAGGTGCAGGTCCTCGTCGTCAT
TGGCCACAGCTGCTGTGGTGGCATCAGGGCGCTCCTCTCCCTCCAGGATGGCGCACCTGACACCTTCCACTTCGTTGAGG
ACTGGGTCAGGATCGGCTTCCCTGCCAAGATCAAGGTGAAGAAAGGGCACGCTTCGGTGCCGTTCGATGACCAGTGTTCC
ATCCTGGAGAAGGAGGCCGTGAACGTGTCCCTCGACAACCTCAAGACGTACCCCTTCGTCAAGGAAGGGCTGGCCAACGG
GACCCTCAGGCTGGTCGGCGGCCACTACAACTTCGTGTCAGGGGAGTTCGACACATGGGAAATTAAGAGCTAAGCTGCCC
GGCCGGCCGCTTAACAACTCCTACCATCATCATAAATATATATACTACATACCTACCGATATGCACCCGATCGATGTGAA
TGCGTGGAGTATTACTCATGTTTTCTGCATGCAGCGACATATATATATATATACCGGATCGCCCAATGTGAATGTAATAA
GTAATAGCATTTTCTACCGCTTTTATTTCTAACGCCGAGCTTTCATGTACTATATAATGTGTTATATGATGAGTAATTTG
ACCGCCCTGTGGTCAAAAGACATCAGCTATAATCCTTTTTTCGCAATATTTATTATGAAGCGTT




Most similar to sp|P40880|CAHC_HORVU

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q84LR6|PPA14_ARATH Probable inactive purple acid phosphatase 14
           OS=Arabidopsis thaliana GN=PAP14 PE=2 SV=1
          Length = 401

 Score =  313 bits (803), Expect(2) = e-128
 Identities = 154/171 (90%), Positives = 154/171 (90%)
 Frame = +2

Query: 20  MEETRRRFXXXXXXXXXXXXXXXXTCHVSAFDFGRRQLRFNTDGRFKILQVSDMHYGFGK 199
           MEETRRRF                TCHVSAFDFGRRQLRFNTDGRFKILQVSDMHYGFGK
Sbjct: 1   MEETRRRFVISSVLSVSLIYLCLSTCHVSAFDFGRRQLRFNTDGRFKILQVSDMHYGFGK 60

Query: 200 ETQCSDVSPAEFPYCSDLNTTSFLQRTIASEKPDLIVFSGDNVYGLCETSDVAKSMGMAF 379
           ETQCSDVSPAEFPYCSDLNTTSFLQRTIASEKPDLIVFSGDNVYGLCETSDVAKSM MAF
Sbjct: 61  ETQCSDVSPAEFPYCSDLNTTSFLQRTIASEKPDLIVFSGDNVYGLCETSDVAKSMDMAF 120

Query: 380 APAIESGIPWVAILGNHDQESDMTRETMMKYIMKLPNSLSQVNPPDAWLYQ 532
           APAIESGIPWVAILGNHDQESDMTRETMMKYIMKLPNSLSQVNPPDAWLYQ
Sbjct: 121 APAIESGIPWVAILGNHDQESDMTRETMMKYIMKLPNSLSQVNPPDAWLYQ 171



 Score =  165 bits (417), Expect(2) = e-128
 Identities = 72/75 (96%), Positives = 74/75 (98%)
 Frame = +3

Query: 531 KIDGFGNYNLQIEGPFGSPLFFKSILNLYLLDGGSYTKLDSFGYKYDWVKTSQQNWYEHT 710
           +IDGFGNYNLQIEGPFGSPLFFKSILNLYLLDGGSYTKLD FGYKYDWVKTSQQNWYEHT
Sbjct: 171 QIDGFGNYNLQIEGPFGSPLFFKSILNLYLLDGGSYTKLDGFGYKYDWVKTSQQNWYEHT 230

Query: 711 SKWLEMEHKKWPFPQ 755
           SKWLEMEHK+WPFPQ
Sbjct: 231 SKWLEMEHKRWPFPQ 245


>sp|Q9FMK9|PPA29_ARATH Probable inactive purple acid phosphatase 29
           OS=Arabidopsis thaliana GN=PAP29 PE=2 SV=1
          Length = 389

 Score =  178 bits (451), Expect(2) = 2e-62
 Identities = 85/136 (62%), Positives = 108/136 (79%)
 Frame = +2

Query: 122 RRQLRFNTDGRFKILQVSDMHYGFGKETQCSDVSPAEFPYCSDLNTTSFLQRTIASEKPD 301
           RR+LRF+ +G FKILQV+DMH+  G +TQC +V P++  +CSDLNTT F+ R IA+EKPD
Sbjct: 36  RRKLRFSVNGEFKILQVADMHFANGAKTQCQNVLPSQRAHCSDLNTTIFMSRVIAAEKPD 95

Query: 302 LIVFSGDNVYGLCETSDVAKSMGMAFAPAIESGIPWVAILGNHDQESDMTRETMMKYIMK 481
           LIVF+GDN++G  +  D  KS+  AFAPAI S IPWVAILGNHDQES  TR+ +M +I+K
Sbjct: 96  LIVFTGDNIFGF-DVKDALKSINAAFAPAIASKIPWVAILGNHDQESTFTRQQVMNHIVK 154

Query: 482 LPNSLSQVNPPDAWLY 529
           LPN+LSQVNPP+A  Y
Sbjct: 155 LPNTLSQVNPPEAAHY 170



 Score = 82.4 bits (202), Expect(2) = 2e-62
 Identities = 41/74 (55%), Positives = 50/74 (67%)
 Frame = +3

Query: 534 IDGFGNYNLQIEGPFGSPLFFKSILNLYLLDGGSYTKLDSFGYKYDWVKTSQQNWYEHTS 713
           IDGFGNYNLQI G   S L  KS+LNLY LD G Y+ +  +   YDW+KTSQQ W++ TS
Sbjct: 171 IDGFGNYNLQIHGAADSKLQNKSVLNLYFLDSGDYSSV-PYMEGYDWIKTSQQFWFDRTS 229

Query: 714 KWLEMEHKKWPFPQ 755
           K L+ E+   P PQ
Sbjct: 230 KRLKREYNAKPNPQ 243


>sp|Q9LU72|PPA28_ARATH Probable inactive purple acid phosphatase 28
           OS=Arabidopsis thaliana GN=PAP28 PE=2 SV=1
          Length = 397

 Score =  153 bits (386), Expect(2) = 9e-44
 Identities = 73/127 (57%), Positives = 93/127 (73%)
 Frame = +2

Query: 131 LRFNTDGRFKILQVSDMHYGFGKETQCSDVSPAEFPYCSDLNTTSFLQRTIASEKPDLIV 310
           LRF  DG FKILQV+DMH+G G  T+C DV  +EF YCSDLNTT FL+R I SE+PDLI 
Sbjct: 50  LRFRDDGTFKILQVADMHFGMGMITRCRDVLDSEFEYCSDLNTTRFLRRMIESERPDLIA 109

Query: 311 FSGDNVYGLCETSDVAKSMGMAFAPAIESGIPWVAILGNHDQESDMTRETMMKYIMKLPN 490
           F+GDN++G   T+D A+S+  A  PAIE GIPW A+LGNHD ES + R  +M ++  +  
Sbjct: 110 FTGDNIFG-SSTTDAAESLLEAIGPAIEYGIPWAAVLGNHDHESTLNRLELMTFLSLMDF 168

Query: 491 SLSQVNP 511
           S+SQ+NP
Sbjct: 169 SVSQINP 175



 Score = 45.4 bits (106), Expect(2) = 9e-44
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +3

Query: 534 IDGFGNYNLQIEGPFGSPLFFKSILNLYLLDGGSYTKLDSFGYKYDWVKTSQQNWYEHTS 713
           IDGFGNY +++ G  GS L   ++ +L+  D G   ++      Y W+K SQ  W + TS
Sbjct: 189 IDGFGNYRVRVYGAPGSVLANSTVFDLFFFDSGD-REIVQGKRTYGWIKESQLRWLQDTS 247


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum
           vulgare PE=2 SV=1
          Length = 324

 Score =  213 bits (543), Expect = 8e-55
 Identities = 100/126 (79%), Positives = 115/126 (91%)
 Frame = +1

Query: 4   KTKYTGIGSAIEYAVCALKVQVLVVIGHSCCGGIRALLSLQDGAPDTFHFVEDWVRIGFP 183
           K KY G+GSAIEYAVCALKV+V+VVIGHS CGGI+ALLSL+DGA D+FHFVEDWVRIGFP
Sbjct: 198 KNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHFVEDWVRIGFP 257

Query: 184 AKIKVKKGHASVPFDDQCSILEKEAVNVSLDNLKTYPFVKEGLANGTLRLVGGHYNFVSG 363
           AK KV+   AS+PFDDQC++LEKEAVNVSL NL TYPFVKEG+ NGTL+LVGGHY+FVSG
Sbjct: 258 AKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGHYDFVSG 317

Query: 364 EFDTWE 381
           +F+TWE
Sbjct: 318 KFETWE 323