miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|33110982|gb|CF074323.1|CF074323 AAAAAACACTCGGCGGGACGGCAGCGCAGGTCCACGCGGGCGCAGCGGAGGCAACGCGATGGTGGCTCGCCGCTTCGTGG
TCCGGCATGGCCCCGCCGCCGCAGCCGGTGGCTCCGTCGAGCGGGAGGAGGAGGAGGAGCACGAGGTGGAGTACGATACG
GAGCACGGCCTCGACGTCCTCCGCCTCCAGATCTTCTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGATCGTGGTGGA
GGCGGATGGGTTGGTGGTGGACGACGGCACCGATCTGGAAACCGTCTCTGAGCGCCTGCGCCTCCTCGCTATCGGCGAGG
AGGAGGAAGACGCCGCCGCAGCGGCCAGGGCGCAGGAAAAGTCCGATGAGGAATTCGCACGGATGCTACAGGCGGAGGAA
GAGGCACTTCTCCTACAACAGTACAGTATACAAAATGATGGTGGAGATGTGTTTAGACAGAGAGTTGAGCCTTACATGCA
CCAGGTTCTGATGTATGAAGATCCAGTGGGACAAGAGGCAGCACGTAAGACAGTTCCAATATGCGAACTGGAGGAGAAGG
CATTGGTTTCACTGGCCAAGGAAGGGAATTTCAATCCTTCGAATGATGAAGAGAAGCATGGCTTTCTGCTGCAATTGCTT
TTCTGGTTTAAGCAATCATTCAGATGGG




Most similar to sp|Q7F0R1|PNG1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7F0R1|PNG1_ORYSJ
           amidase OS=Oryza sativa subsp. japonica GN=PNG1 PE=2
           SV=1
          Length = 447

 Score =  236 bits (602), Expect = 1e-61
 Identities = 129/208 (62%), Positives = 141/208 (67%), Gaps = 5/208 (2%)
 Frame = +2

Query: 59  MVARRFVVRHGPAAAAGGSVXXXXXXXXXXXXXXXHGLDVLRLQIFSLTAVPPDLQKIVV 238
           MVARRFVVR G     GG                 HGLD+LRLQIFSLT+VPP+LQKIVV
Sbjct: 1   MVARRFVVRQGGGGGGGGEAEEHEVEYDTE-----HGLDILRLQIFSLTSVPPELQKIVV 55

Query: 239 EADGLVVDDGTDLETVSERLRLLXXXXXXXXXXXXXXXXX-----KSDEEFARMXXXXXX 403
           EADG VVDDGTDLE +SE LRL+                      KSDEE ARM      
Sbjct: 56  EADGSVVDDGTDLEAISEGLRLVAITGEEEEAEAAAAAEAARAQEKSDEELARMIQAEEE 115

Query: 404 XXXXXXYSIQNDGGDVFRQRVEPYMHQVLMYEDPVGQEAARKTVPICELEEKALVSLAKE 583
                 YSI+NDGG+ FR+RVEPYMHQVLMYEDP+ QEAARKTVP+ EL+EKALVSLAKE
Sbjct: 116 ALLLQQYSIRNDGGEEFRERVEPYMHQVLMYEDPMRQEAARKTVPMDELQEKALVSLAKE 175

Query: 584 GNFNPSNDEEKHGFLLQLLFWFKQSFRW 667
           GNF+PS DEE H FLLQLLFWFKQSFRW
Sbjct: 176 GNFSPSKDEEDHAFLLQLLFWFKQSFRW 203