miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|33120679|gb|CF081636.1|CF081636 ATATCTGGTAACCCAATAATGAGTGATGTAGAGTTTGACAACCTGAAAAAACAACTAAAGAAAGATGGAAGTGATATAGT
GGCTGAGGGTCCAAGATGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGACTGTTGATTACCTCAAAATGTTCCTCA
TAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCCTGGATGACATTACTGGGTTTGAAATTACATACCTT
TTGGAGCTTCCAGAGCCATTTAGTTTTATCTTCACTTGGTTCGCGGCTCTGCCGTTCATATTATGGTTATCCTTTACGCT
AACCAACGTCATTGTGAGGGATTTCTTGATATTGAAGGGCCTTTGTCCAAACTGTGGGACAGAGAATACTTCATTCTTTG
GAACCATATTGTCAATTTCCAGTGGGGGTTCTACCAACACTGTCAAATGCACAAACTGTCAAACCGCTCTAGTATTTGAT
CAGGAAGATCGGTTGGATACATTGCCAGAAGGAAGTGAAGCTTGAGTTCGGGAGACCATGGATATGTTTGAAAGAAGAAG
CTACT




Most similar to sp|Q8H112|PGL1A_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic
           OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1
          Length = 324

 Score =  248 bits (633), Expect = 2e-65
 Identities = 117/174 (67%), Positives = 141/174 (81%)
 Frame = +1

Query: 1   ISGNPIMSDVEFDNLKKQLKKDGSDIVAEGPRCSLRSRKVYSDLTVDYLKMFLINVPAAV 180
           +SGNPI++D E+D LK +LK DGSDIV+EGPRCSLRS+KVYSDL VDY KM L+NVPA V
Sbjct: 151 VSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATV 210

Query: 181 VAVGLFFFLDDITGFEITYLLELPEPFSFIFTWFAALPFILWLSFTLTNVIVRDFLILKG 360
           VA+GLFFFLDDITGFEITY++ELPEP+SFIFTWFAA+P I++L+ ++T +I++DFLILKG
Sbjct: 211 VALGLFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKG 270

Query: 361 LCPNCGTENXXXXXXXXXXXXXXXXNTVKCTNCQTALVFDQEDRLDTLPEGSEA 522
            CPNCGTEN                NTVKCTNC TA+V+D   RL TLPEGS+A
Sbjct: 271 PCPNCGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324