miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|34371382|gb|CB839991.1|CB839991 CCACGCGTCCGCTTAAGGCGCTGCCCCACCCTAGTCAAGCCGCTGGGCACACCCTAATCAGGAATCCTGCCAGCCATGAG
GCGAGGACAAGAAGGGTGCAGACTTTCTGATTCATGATGAGGGTGTAGTGCAGTGGCTTGCAGATGGCAACATAACGATC
GTAAGACATAGCAGTTAGAAGAAAGAACTCAGACACTCCCATGGAGATGAAGAAATATAACTGAGCCAAACAGTTGTTAT
AGGAAATTGTCTTGACTTTAGTAATTATTGACTCCAAAAATCTAGGGATGGAAACACTGGTGAATATAATTTCTAAGAAG
GAGAAATTCTGGAGGAAGAAATACATAGGAGTCTTTAACTGAGAGTCTAGCAAGGTGACAATGATGATGGTTTAGGTTTC
CAGTGACACTTAATATGTAAGCAAANAAAANNACANNNNCNTCNCCNTCNTNCCNCNNNTCTNNCCNNCNCNNCNCNNNC
CNNNNGG




Most similar to sp|Q9NZP0|OR6C3_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P19594|2SS_SOYBN 2S albumin OS=Glycine max PE=1 SV=2
          Length = 158

 Score =  152 bits (384), Expect(2) = 8e-49
 Identities = 78/118 (66%), Positives = 78/118 (66%)
 Frame = +1

Query: 115 RKQLQGVNLTPCEKHIMEKIQGRGXXXXXXXXXNHILRTMRGRINYIRRNXXXXXXXXXX 294
           RKQLQGVNLTPCEKHIMEKIQGRG         NHILRTMRGRINYIRRN          
Sbjct: 32  RKQLQGVNLTPCEKHIMEKIQGRGDDDDDDDDDNHILRTMRGRINYIRRNEGKDEDEEEE 91

Query: 295 XHMQKCCTEMSELRSPKCQCKALQKIXXXXXXXXXXXXXXXXXXXXINLATMCRFGPM 468
            HMQKCCTEMSELRSPKCQCKALQKI                    INLATMCRFGPM
Sbjct: 92  GHMQKCCTEMSELRSPKCQCKALQKIMENQSEELEEKQKKKMEKELINLATMCRFGPM 149



 Score = 61.6 bits (148), Expect(2) = 8e-49
 Identities = 28/30 (93%), Positives = 28/30 (93%)
 Frame = +3

Query: 21  MAKFTILLISLPFCIAHTCSASKWQHQQDS 110
           M KFTILLISL FCIAHTCSASKWQHQQDS
Sbjct: 1   MTKFTILLISLLFCIAHTCSASKWQHQQDS 30


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9NZP0|OR6C3_HUMAN Olfactory receptor 6C3 OS=Homo sapiens
           GN=OR6C3 PE=2 SV=2
          Length = 311

 Score =  172 bits (435), Expect = 1e-42
 Identities = 81/103 (78%), Positives = 94/103 (91%)
 Frame = -1

Query: 367 DSQLKTPMYFFLQNFSFLEIIFTSVSIPRFLESIITKVKTISYNNCLAQLYFFISMGVSE 188
           DS L+TPMYFFL+NFSFLEI FT+V IPRFL +IIT+ KTISYNNC AQL+FFI MGV+E
Sbjct: 49  DSHLQTPMYFFLRNFSFLEISFTTVCIPRFLGAIITRNKTISYNNCAAQLFFFIFMGVTE 108

Query: 187 FFLLTAMSYDRYVAICKPLHYTLIMNQKVCTLLVLASWLAGFL 59
           F++LTAMSYDRYVAICKPLHYT IMN+K+CTLLVL +WL+GFL
Sbjct: 109 FYILTAMSYDRYVAICKPLHYTSIMNRKLCTLLVLCAWLSGFL 151