miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|37245173|gb|BJ613007.1|BJ613007 TCGGCACGAGGCTAAACGTTAACAGCGATCCGGGACTGAGGGGAATAACAACGCGACTGTTCCGGGAAAGCGCGGGAGTG
TTAGGCGTATGATGCTATTCCTATTCAGTCAAGTGTGGTCCTATGTTCCTGCCCATTGTCTTCAGTTGTGAGACGCTCCT
TCAGACTCCAGCTCTTCACCTGTCCTTGGCAGTGGACCAAGTACCAACATGGATGTGAAGGCTGTAGAGTCCAGAACAAA
CCCATTGCCGCACCCAGGACAGCAAGAACCGCACTCTCAACAGCCCCGAAAAAAACGACCCCAGGATTTCAAGTTTGGAA
AAATTCTGGGTGAAGGGTCTTTTTCAACAGTTGTCTTAGCCAAAGAGATAACAACAGGAAGAGAATATGCCATTAAAATT
TTACAGAAGCGACATATTGTAAAGGAGAACAAGGTACTTTATGTGACCAGGGAAAGAGATGTTATGTCCCGTTTGGACCA
CCCATTCTTCGTTAAACTTTATTTCACGTTTCAAGATGCTGAAAAGCTCTATTTTGGTCTTAGTTACGCTAAGAACGGAG
AACTACTAAAGTACATACGAAAGATTGGCTCATTTGATGAAACCTGCACAAGATTTTATACTGCTGAAATTGTATGC




Most similar to sp|O55173|PDPK1_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O55173|PDPK1_RAT 3-phosphoinositide-dependent protein kinase 1
          Length = 559

 Score =  234 bits (597), Expect = 3e-61
 Identities = 121/147 (82%), Positives = 128/147 (87%), Gaps = 3/147 (2%)
 Frame = +2

Query: 203 TNMDVKAVESR--TNPLP-HPGQQEPHSQQPRKKRPQDFKFGKILGEGSFSTVVLAKEIT 373
           + MD    E+R  TNPL  HP Q  P   QPRKKRP+DFKFGKILGEGSFSTVVLA+E+ 
Sbjct: 50  STMDGTTAEARPSTNPLQQHPAQLPP---QPRKKRPEDFKFGKILGEGSFSTVVLARELA 106

Query: 374 TGREYAIKILQKRHIVKENKVLYVTRERDVMSRLDHPFFVKLYFTFQDAEKLYFGLSYAK 553
           T REYAIKIL+KRHI+KENKV YVTRERDVMSRLDHPFFVKLYFTFQD EKLYFGLSYAK
Sbjct: 107 TSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAK 166

Query: 554 NGELLKYIRKIGSFDETCTRFYTAEIV 634
           NGELLKYIRKIGSFDETCTRFYTAEIV
Sbjct: 167 NGELLKYIRKIGSFDETCTRFYTAEIV 193