miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|39623818|gb|CK217714.1|CK217714 CGTACCGCGATCGGAGCACGAGGACACTGACATGGACTGAACCGATAGAAAGTGAGATTCGCGGGGCGCAGGTTCGTGAG
GAGCTAGGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGCTGGGGAAGAAGGTGCGGGTG
AAGTGCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGGACCAGGCCCGAGAAGATCCG
CATCCAGAAGTGGTACACCATCTACGAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGGGCCTCGAGC
TCTACTACAACTAGAAGTATGGCCGCATTTGAGTCCCGTTGTCTTAAGAAGCTACTCCCTCCGTTCGGAATTACTTGTCT
CGGATATGGATGTATCTAGAACTAAAATATGTTTAGATACATCCATTTCTACGACAAGTAATTCCGAACGGAGGGAGTAC
GTACTACTGTATATGGAATCCAACGAACCATAGAAGACTGCTGGATGTACCAATGACTGCCGACCTGAAATACTGAATGC
TACTTATAATTGTGATGTGATGTGACGCTACTCGTACACTACATATAACATAATGTTTGTGACCCNNNNNNNNNNNNNNN
GNNNNGNNANNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNCNNGN
NNNNCNGNNNNNNGGGGGGCNNGNNCNCGGCNNGNNNGGNGGGGGGGGGGCCCGGCCCCCCACACCGGGGGGCCGAAAAG
GGGACCCCCCCACACCGGCAAGCCCAGGGCCGGGGCCCGGAGACCCCGGGGGGGACACAACGGCCGACCGCACCCCAGCC
ACGCCGGGGTCCAACCACCAAGGAAAANGGGAAAGGGAAAGCCGCCCCCCCCGCCCGCGAAGAAGGCCAAGGGCAGAACC
CTCCACCCGGGGCGATCGTCCTCCGCAAAAAAAACACGGGCGCCCGGGGTTGTAATTAAAAGCCTTTTCGCCCCGAGGCG
GAAGGTTCTTTTTGTGTATTACCACCAAAGTCGGGGCGGGCCAAACCCCTCCTCCTCTTCTTATTTGCATACCCCA




Most similar to sp|Q9FGZ9|UBL5_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FGZ9|UBL5_ARATH Ubiquitin-like protein 5 OS=Arabidopsis
           thaliana GN=UBL5 PE=1 SV=1
          Length = 73

 Score =  143 bits (360), Expect = 3e-33
 Identities = 68/73 (93%), Positives = 70/73 (95%)
 Frame = +2

Query: 113 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYEDHITLGDY 292
           MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQKWY IY+DHITL DY
Sbjct: 1   MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 293 EIHDGMGLELYYN 331
           EIHDGMGLELYYN
Sbjct: 61  EIHDGMGLELYYN 73