miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|4246138|gb|AI403051.1|AI403051 CATCAGTACTACCAAGCCAACCAACAACCACCAAACCTCAGAAATCAACATGAAGTTCTTCCAAGCCGCCGCCCTTCTCT
TGGCCATGTTCGCTGCCCTCGCCAACGCCGAGCCCGTTCCCCAACCTGGAACCGTGCTCATCCAGACCGACAACACCCAG
TACATTCGTACTGGTTAGGATTAGAGAACCATGTTGACCCAACATTTGACATTTGCCTATCCATTTGGACTTTTGAATAA
AAATTTTAAAATTACCTAAAAAAAAAAAAAAAAAACTGAGACTAGTTCTGATTATTTTCTACAAATCATAAAGATATCGG
AACTTTATATTTTATTTTTGGAGCTTGAGCTGGAATAGTTGGAACATCTTTAAGAATTTTAATTCGAGCTGAATTAGGAC
ATCCTGGAGCATTAATTGGAGATGATCAAATTTATAATGTAATTGTAACTGCACATGCTTTTATTATAATTTTTTTTATA
GGTATACCTATTATAATTGGTGGATTTGGAAATTGATTAGTGCCTTTAATATTAGGTGCTCCTGATATAGCATTCCCACG
AATAAATAATATAAGATTTTGACTTCTACCTCCTGCTCTTTCTTTACTATTAGTAAGTAGAATAGTTGAAAATGGAGCTG
GGACAGGATGAACTGTTTATCCAC




Most similar to sp|P00400|COX1_DROYA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P00400|COX1_DROYA Cytochrome c oxidase subunit 1 OS=Drosophila
           yakuba GN=mt:CoI PE=3 SV=1
          Length = 512

 Score =  158 bits (399), Expect = 3e-38
 Identities = 84/124 (67%), Positives = 90/124 (72%)
 Frame = +1

Query: 292 LFSTNHKDIGTLYFIFGA*AGIVGTSLRILIRAELGHPGALIGDDQIYNVIVTAHAXXXX 471
           LFSTNHKDIGTLYFIFGA AG+VGTSL ILIRAELGHPGALIGDDQIYNVIVTAHA    
Sbjct: 6   LFSTNHKDIGTLYFIFGAWAGMVGTSLSILIRAELGHPGALIGDDQIYNVIVTAHAFIMI 65

Query: 472 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXVSRIVENGAGTG* 651
                        N LVPL+LGAPD+AFPR+NN+ F           VS +VENGAGTG 
Sbjct: 66  FFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPALSLLLVSSMVENGAGTGW 125

Query: 652 TVYP 663
           TVYP
Sbjct: 126 TVYP 129