miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|45953139|gb|CN127255.1|CN127255 CACGGCGTTCGGCAGGCTGGCCAAGCCCGGCCTCAACGACAAGCTCCGCCACTCCGGCATCATCGACATCGAGTTCACCA
GGGTGCCGTGCGAGTTCCCTGGGCTGAAGATCGGTTTCCACGTGGAGGAGTACTCGAACCCCGTCTACTTCGCGGTGCTG
GTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTGATGGAGTCCAAGACGGCGCACGGGCCCCCGACGGG
GCGGTGGACGCCCATGCGCGAGTCCTGAGGATCCATCTGGCGGATGGACACCAACCACCGCATGCAGCCGCCCTTCTCCA
TCCGCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCAGAAACGTCATCCCGGCCAACTGGAGGCCCAACACTTTCTAC
CGCTCCTTCGTCCAGTACCAGTAGTAGCACGTACGTACCTGATTGATTGATTGATTGATTGGATCCCAGCCCAGCCCGGC
CCAGCCCGCAATTGGAGTGGAATCCGGCTCGGTTCGGTTCGGTTCGGTCATCATCATCACTACGTACGTACTATACGCTA
CTACCACTAGACGACTACTACTGCTACCAAGTACGGCGAAACGGAACGGCTAGTCGTTGTGTCTCTGGTCATCGTGTCGT
TGCAGTTGTATCATGGTCCTTGGAGTGAGTCGTTGCATGCATTGGGGGCGCGCTTTTAGGTCAGGCGTCATGTGCGAGTG
TTTGTGGGTCTGTAAGGCTGGCATGTGCATGGTGCGTGACCCT




Most similar to sp|Q94LR4|EXPB4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94LR4|EXPB4_ORYSJ Expansin-B4 OS=Oryza sativa subsp. japonica
           GN=EXPB4 PE=2 SV=1
          Length = 286

 Score =  284 bits (726), Expect = 5e-76
 Identities = 134/139 (96%), Positives = 136/139 (97%)
 Frame = +2

Query: 2   TAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGD 181
           TAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGD
Sbjct: 147 TAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGD 206

Query: 182 GDVVQVDLMESKTAHGPPTGRWTPMRES*GSIWRMDTNHRMQPPFSIRIRNESGKTLVAR 361
           GDVVQVDLMESKTAHGPPTGRWTPMRES GSIWR+DTNHR+Q PFSIRIRNESGKTLVA 
Sbjct: 207 GDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTNHRLQAPFSIRIRNESGKTLVAN 266

Query: 362 NVIPANWRPNTFYRSFVQY 418
           NVIPANWRPNTFYRSFVQY
Sbjct: 267 NVIPANWRPNTFYRSFVQY 285