miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|45986090|gb|CN146275.1|CN146275 GCCATGGTCCCAGCCTACGACAAGACCAAGTACACCGGCATTGGGTCTGCCATTGAGTACGCCGTGTGCGCCCTCAAGGT
GCAGGTCCTCGTCGTCATTGGCCACAGCTGCTGTGGTGGCATCAGGGCGCTCCTCTCCCTCCAGGATGGCGCACCTGACA
CCTTCCATTTGGTTGAGGACTGGGTCAGGATCGGCTTCCCTGCCAAGATCAAGGTGAAGAAAGAGCACGCTTCGGTGCCG
TTCGATGACCAGTGTTCCATCCTGGAGAAGGAGGCCGTGAACGTGTCCCTCGACAACCTCAAGACGTACCCCTTCGTCAA
GGAAGGGCTGGCCAACGGGACCCTCAGGCTGGTCGGCGGCCACTACAACTTCGTGTCAGGGGAGTTCGACACATGGGAAA
TTAAGAGCTAAGCTGCCCGGCCGGCCGCTTAACAACTCCTACCATCATCATAAATATATATACTACATACCTACCGATAT
GCACCCGATCGATGTGAATGCGTGGAGTATTACTCATGTTTTCTGCATGCAGCGACATATATATATATATACCGGATCGC
CCAATGTGAATGTAATAAGTAATAGCATTTTCTACCGCTTTTATTTCTAACGCCGAGCTTTCATGTACTATATAATGTGT
TATATGATGAGTAATTTGACCGCCCTGTGGTCAAAAGACATCAGCTATAATCCTTTTTTCGCAATATTTATTATGAAGCG
TTTACCTCTTGTACTGCCTTT




Most similar to sp|P40880|CAHC_HORVU

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6H849|NRL4_ORYSJ Bifunctional nitrilase/nitrile hydratase NIT4
           OS=Oryza sativa subsp. japonica GN=NIT4 PE=2 SV=1
          Length = 362

 Score = 99.4 bits (246), Expect(2) = 2e-33
 Identities = 49/57 (85%), Positives = 52/57 (91%)
 Frame = +3

Query: 306 VAMNGGADPSATTVRATVVQASTIFHDTPATLDKAERLIAEAAGYGSQLVVFPEAFI 476
           V MNGGAD  A TVRATVVQAST+F+DTPATLDKAERLI EAAGYGSQLVVFPEAF+
Sbjct: 18  VEMNGGADSGAATVRATVVQASTVFYDTPATLDKAERLIEEAAGYGSQLVVFPEAFV 74



 Score = 64.3 bits (155), Expect(2) = 2e-33
 Identities = 29/45 (64%), Positives = 33/45 (73%)
 Frame = +2

Query: 467 SFY*GYPRGSTFGFXXXXXXXNPKDRGKEAFRMYHASAIDVPGSE 601
           +F  GYPRGSTFGF       NPKD+GKE FR YHA+AI+VPG E
Sbjct: 72  AFVGGYPRGSTFGFGANISIGNPKDKGKEEFRKYHAAAIEVPGPE 116


>sp|Q42966|NRL4B_TOBAC Bifunctional nitrilase/nitrile hydratase
           NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1
          Length = 348

 Score = 85.5 bits (210), Expect(2) = 2e-25
 Identities = 43/52 (82%), Positives = 47/52 (90%)
 Frame = +3

Query: 321 GADPSATTVRATVVQASTIFHDTPATLDKAERLIAEAAGYGSQLVVFPEAFI 476
           G + S  TVRATVVQASTIF+DTPATLDKAERL+AEAA YG+QLVVFPEAFI
Sbjct: 21  GDNSSTPTVRATVVQASTIFYDTPATLDKAERLLAEAASYGAQLVVFPEAFI 72



 Score = 51.2 bits (121), Expect(2) = 2e-25
 Identities = 27/45 (60%), Positives = 29/45 (64%)
 Frame = +2

Query: 467 SFY*GYPRGSTFGFXXXXXXXNPKDRGKEAFRMYHASAIDVPGSE 601
           +F  GYPRGSTFG        N   +GKE FR YHASAIDVPG E
Sbjct: 70  AFIGGYPRGSTFGVSIG----NRTAKGKEEFRKYHASAIDVPGPE 110


>sp|Q42965|NRL4A_TOBAC Bifunctional nitrilase/nitrile hydratase
           NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1
          Length = 349

 Score = 82.0 bits (201), Expect(2) = 2e-24
 Identities = 42/52 (80%), Positives = 46/52 (88%)
 Frame = +3

Query: 321 GADPSATTVRATVVQASTIFHDTPATLDKAERLIAEAAGYGSQLVVFPEAFI 476
           G + S  TVRATVVQASTIF+DTPATL KAERL+AEAA YG+QLVVFPEAFI
Sbjct: 21  GDNSSTPTVRATVVQASTIFYDTPATLVKAERLLAEAASYGAQLVVFPEAFI 72



 Score = 51.2 bits (121), Expect(2) = 2e-24
 Identities = 27/45 (60%), Positives = 29/45 (64%)
 Frame = +2

Query: 467 SFY*GYPRGSTFGFXXXXXXXNPKDRGKEAFRMYHASAIDVPGSE 601
           +F  GYPRGSTFG        N   +GKE FR YHASAIDVPG E
Sbjct: 70  AFIGGYPRGSTFGVSIG----NRTAKGKEEFRKYHASAIDVPGPE 110


>sp|P46011|NRL4_ARATH Bifunctional nitrilase/nitrile hydratase NIT4
           OS=Arabidopsis thaliana GN=NIT4 PE=1 SV=1
          Length = 355

 Score = 79.0 bits (193), Expect(2) = 2e-21
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 324 ADPSATTVRATVVQASTIFHDTPATLDKAERLIAEAAGYGSQLVVFPEAFI 476
           A  S++ VRATVVQAST+F+DTPATLDKAERL++EAA  GSQLVVFPEAFI
Sbjct: 29  AGDSSSIVRATVVQASTVFYDTPATLDKAERLLSEAAENGSQLVVFPEAFI 79



 Score = 43.9 bits (102), Expect(2) = 2e-21
 Identities = 23/45 (51%), Positives = 27/45 (60%)
 Frame = +2

Query: 467 SFY*GYPRGSTFGFXXXXXXXNPKDRGKEAFRMYHASAIDVPGSE 601
           +F  GYPRGSTF             +G++ FR YHASAIDVPG E
Sbjct: 77  AFIGGYPRGSTFELAIGSRTA----KGRDDFRKYHASAIDVPGPE 117


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum
           vulgare PE=2 SV=1
          Length = 324

 Score =  223 bits (568), Expect = 1e-57
 Identities = 105/132 (79%), Positives = 120/132 (90%)
 Frame = +1

Query: 4   MVPAYDKTKYTGIGSAIEYAVCALKVQVLVVIGHSCCGGIRALLSLQDGAPDTFHLVEDW 183
           MVPAY K KY G+GSAIEYAVCALKV+V+VVIGHS CGGI+ALLSL+DGA D+FH VEDW
Sbjct: 192 MVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLKDGADDSFHFVEDW 251

Query: 184 VRIGFPAKIKVKKEHASVPFDDQCSILEKEAVNVSLDNLKTYPFVKEGLANGTLRLVGGH 363
           VRIGFPAK KV+ E AS+PFDDQC++LEKEAVNVSL NL TYPFVKEG+ NGTL+LVGGH
Sbjct: 252 VRIGFPAKKKVQTECASMPFDDQCTVLEKEAVNVSLQNLLTYPFVKEGVTNGTLKLVGGH 311

Query: 364 YNFVSGEFDTWE 399
           Y+FVSG+F+TWE
Sbjct: 312 YDFVSGKFETWE 323