miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|46212134|gb|CN187197.1|CN187197 AGTCGCACACAGAGACTCTCACTCCCAAGCGAATGGAGGATGTGAAGAAGAGGAAGATGGAGGATGATAATATTTTAATC
AACGGCCAAGATTTTAATTCATCTTCATCGTCATCACAAGATCACCTGCGTTCTTTACTCGACCCTCTTTCCAAGTCCCA
GCTCGTCGATCTCCTCTCTAGACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTGTCGCCAGTGCAGATC
CAGTTCATCGAAAGCTTTTTGTTCGTGGCTTAGCTTGGAATACCACTTCGGAAACCTTGTGTGCTGCATTTCGAGTGCAT
GGTGAAATAGAAGAAGGAGCTGTCATCTATGACAAAGCAACAGGAAAATCACGTGGCTATGGTTTCATAACATACAAGCA
CATGGAGTCAACCCAGAGTGCGCTAAGAGCACCTAGCAAGTTGATTGACGGTCGGTTGGCTGTCTGTAATTTAGCTTGTG
AGGGATTAAGTGGGGTGAGTGCTGTGCCTGATTTAGCACAGAGGAAGCTCTACATTGGGGGCCTGTCACCAGAAGTAACA
ACTGAGGTGCTGCTGAACTTCTTTGGAAGACATGGTGAGATTGAGGAAGGTTCAGTTGCATATGACAAGGACACAAATGA
ATCACGTGGATTTGGCTTTGTTACATACAAAACAGTCGAGGCAGCAAAGAAAGCCGTAGATGATCCACACAAGACTCTTG
GGGGAAGGACTATCATTGTGAAGCTTGCTGATACCCACAAGGGCAAGC




Most similar to sp|Q6NU14|HNDLB_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein
           D-like-B OS=Xenopus laevis GN=hnrpdl-b PE=2 SV=1
          Length = 291

 Score =  104 bits (259), Expect = 8e-22
 Identities = 66/204 (32%), Positives = 101/204 (49%)
 Frame = +3

Query: 138 LDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRV 317
           L  +++S LV  LSRL  ++     +   + S      K+F+ GL+W+T+ + L      
Sbjct: 3   LSEITRSTLVSTLSRLLRRHKESNPDFFLIRS------KMFIGGLSWDTSKKDLTEYLSR 56

Query: 318 HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGV 497
            GE+ +  +  D  TG+SRG+GF+ +K   S    L      +DG+L     A + L G 
Sbjct: 57  FGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA-KALQGK 115

Query: 498 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 677
                   +K+++GGLSPE T E +  +FG  GEIE   +  D  TNE RGF FVTY   
Sbjct: 116 EP-----PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDE 170

Query: 678 EAAKKAVDDPHKTLGGRTIIVKLA 749
           E  +K ++     +G     +K A
Sbjct: 171 EPVQKLLESRFHQIGTGKCEIKAA 194