miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|46521773|gb|BJ678652.1|BJ678652 CCCGCAAATTCAGTTCGATCCAGACCCAGCTGAAGCAGAGCACCTGTGAGGCGGTCATGATACTGAGGTCCCGCTTTCTA
GATGCCAGACGCAAGAGGCGCAACTTCAGCAAACAGGCTACAGAGGTCCTCAATGAGTATTTTTACTCCCACTTGTCTAA
CCCATATCCCAGTGAAGAAGCCAAAGAGGAACTTGCCAAACAGTGTGGTATCACCGTCTCTCAGGTCTCCAACTGGTTTG
GCAACAAGAGAATCCGCTACAAGAAAAACATTGGCATGATGACCACCCAGCGAGTCGCCACTCAGACCATGGGCCCCCGA
CCAGCCACTGCAGCTGCCGCAGCAGCCACCCCCGTGCGTGGAGTACCTCAGTACAAGTATGCAGCAGGAGTTCGCAATAC
CCAACAGCACATGAACACTCAGCCACAAGTTAACATGCAGCAGCCTGCAGTCCACGTCCAGGGACAGGAGCCTCTGACTG
CCTCCATGCTGGCTGCTGCTCCTCCTCAGGAGCAGAAGCAGATGCTGGGTGAGCGTCTGTTTCCACTGATCCAGAACATG
CACCCCAGCCTGGCAGGCAAGATCACAGGCATGCTGCTGGAGATCGACAACTCAGAGCTGCTCCACATGCTGGAGT




Most similar to sp|B3DM47|PBX2_XENTR

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|B3DM47|PBX2_XENTR Pre-B-cell leukemia transcription factor 2
           OS=Xenopus tropicalis GN=pbx2 PE=2 SV=1
          Length = 422

 Score =  181 bits (459), Expect = 3e-45
 Identities = 89/91 (97%), Positives = 90/91 (98%)
 Frame = +3

Query: 3   RKFSSIQTQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEA 182
           RKFSSIQ QLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEA
Sbjct: 210 RKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEA 269

Query: 183 KEELAKQCGITVSQVSNWFGNKRIRYKKNIG 275
           KEELAK+CGITVSQVSNWFGNKRIRYKKNIG
Sbjct: 270 KEELAKKCGITVSQVSNWFGNKRIRYKKNIG 300