miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|47687384|gb|CN791404.1|CN791404 TCCCGGGATTTCTAACGCCCGCAGCCCGTTTCCCAGGAAAGGCCCCGACCGCGTGCCCCGCCTTCCCTCAGCTTGCCGGG
TCCGCGAGAACGTTTTGACGCCCACGCCCTGCACAGCGCGGCGCTGTTCTGGGAACGCGCTCTCATCACCCAACGTTGCC
AACTGCAGAGCCGCGCTGAGCATGCGGGACTACGACGAAGTGACCGCCTTCCTGGGCAAGTGGGGGCCCTTCCAGCGCCT
TATCTTCTTCCTGCTCAGCGCCAGCATCATCCCCAACGGCTTCAACGGTATGTCAGTCGTGTTTCTGGCAGGGACCCCAG
AACATCACTGCCGGGTGCCGGACACCGCGAACCTGAGCAGCGCGTGGCGCAACCACAGTATCCCCGTGCGGCTGCAGGAC
GGCCGCGAGGTGCCCCAGAGCTGCCGGCGCTACCGACTCGCTACGATCGTCAACTTCTCGGCGCTCGGGCTGGAGCCGGG
GCGCGATGTGAACCTGGAGCAGCTGGAGCAGGAGGGTTGCCTGGATGGCTGGGAATTTAGCCAGGACATCTACATGTCCA
CCATCGTCACCGAGTGGAGTCTGGTGTGTGAGGAGGATTGGAAGACGCCCCTCACCACTTCCCTGTTCTTTGTAGGCGTG
CTTCTCGGCTCCTTTGTGTCTGGGCAGCTGTCAGACAGATTTGGCAGAAAGACCATCCTCTTCGCAACCATGGCTGTGCA
GACTGGCTTCAG




Most similar to sp|Q9H015|S22A4_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9H015|S22A4_HUMAN Solute carrier family 22 member 4 OS=Homo
           sapiens GN=SLC22A4 PE=1 SV=3
          Length = 551

 Score =  340 bits (872), Expect = 6e-93
 Identities = 160/183 (87%), Positives = 173/183 (94%)
 Frame = +2

Query: 182 MRDYDEVTAFLGKWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHHCRVPDTANLSS 361
           MRDYDEV AFLG+WGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEH CRVPD ANLSS
Sbjct: 1   MRDYDEVIAFLGEWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHRCRVPDAANLSS 60

Query: 362 AWRNHSIPVRLQDGREVPQSCRRYRLATIVNFSALGLEPGRDVNLEQLEQEGCLDGWEFS 541
           AWRN+S+P+RL+DGREVP SC RYRLATI NFSALGLEPGRDV+L QLEQE CLDGWEFS
Sbjct: 61  AWRNNSVPLRLRDGREVPHSCSRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFS 120

Query: 542 QDIYMSTIVTEWSLVCEEDWKTPLTTSLFFVGVLLGSFVSGQLSDRFGRKTILFATMAVQ 721
           QD+Y+ST+VTEW+LVCE++WK PLTTSLFFVGVLLGSFVSGQLSDRFGRK +LFATMAVQ
Sbjct: 121 QDVYLSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQ 180

Query: 722 TGF 730
           TGF
Sbjct: 181 TGF 183