miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48467674|gb|CN986083.1|CN986083 CAAATCAGCCGAGCCAAGCTGGAGCCCGTCATGGAGGAGCTGCGCCAGAAGGTCGCCACCAACGTGGAGGAGACCAAAGC
GGCCCTCATGCCCATCGTGGAGTCCGTGCGCGCCAAGCTCACCGAGCGCCTGGAGACCCTGAGGGCGGCGGCGGCCCCTC
ACGTGGAGGAGTACAAACAGCAGATGATGCAGCTCTACAACCAGGCGCATGGCGTCAACGCCGAGGAGCTCACCGCCCTG
AAGGAGAAGCTGGCTCCGCTGGCAGAGGACATTAGGGCCAAGCTCGCCGCCATGGTCGGCGTCATCACCGAAACCTTCAA
CAAAAACTAAATCCTCTCTTTCCCTCCCTTTAACTAACCTCGCCTTCCAGGCTGATCCATCTAAGCTGTCTCTTATGCTC
TTTCTACCCCCTCCCCACCCCCCGCCTCCCTCCCACAAACAGACCACCTCAGAAGTGAAGCTGGTGCCTAACTTATGAAC
GAACATGGCGGAACTTCCTCTCCTCCGAGCACACACGCAAGCACGCGCACAGAGGCACATCCACACTCAACACACACACA
CATACACACGCCAGCGCGCCTTTAGTCTTATCATGCCATCTGCTAACATGTTGTGTATGAATAGTGTGTGAATTTGCCAC
ACGGGCTTGAATCTCTGTGTAATAAATGGTAACTGTGCTTATGATGAAAAAAAAATACAGCTCGTAAACATCTGACTGTT
TATGGGAGATAGAAAGAACGAACACCCGTTTAAAGAAAAGGAAAGGGCCTCTCAGATATATATAGATCATATATCTCCCC
CGACACAGACACAGT




Most similar to sp|O42175|APOA1_SPAAU

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O42175|APOA1_SPAAU Apolipoprotein A-I OS=Sparus aurata GN=apoa1
           PE=2 SV=1
          Length = 260

 Score =  112 bits (279), Expect = 4e-24
 Identities = 55/106 (51%), Positives = 78/106 (73%)
 Frame = +1

Query: 10  RAKLEPVMEELRQKVATNVEETKAALMPIVESVRAKLTERLETLRAAAAPHVEEYKQQMM 189
           + +LEPVMEELR K+  NVEETKA LMP+VE+VR K+TERLE+LR    P+V+EYK+QM 
Sbjct: 158 KTRLEPVMEELRTKIQANVEETKAVLMPMVETVRTKVTERLESLREVVQPYVQEYKEQMK 217

Query: 190 QLYNQAHGVNAEELTALKEKLAPLAEDIRAKLAAMVGVITETFNKN 327
           Q+Y+QA  V+ +   AL+ K+ PL E+I+ K+ A+  +I  +  K+
Sbjct: 218 QMYDQAQTVDTD---ALRTKITPLVEEIKVKMNAIFEIIAASVTKS 260