miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48739898|gb|CO070417.1|CO070417 ATTTTTTAAGGGAAAAATGCTCTTTTGCTTGTGCATGGCTACAACAATTCCACATTCCAAATTACATATAGTTACATATA
GTTTGTATTAATATGAGAATTGTTACATTTTTCATAGTTATTATATATGCCAACTTGAAGAGGCAAAATTTGAAAGTGAT
GATGAAATGAATGTCTTATGATTGGAGAACAAAACTTTTGCCGAAAATCATGTCATCGGTCGAAAAATCAGCCTCCTTCC
TGAATGTTCCCCTGCCGAAATCTAGGTTATACGAGTCTGTGAGTCCTTCAACCAGGTCAAATTCCGGTTTCCATCCTAGC
ACATGCTTTGCTTTTTCGACCGATGCGAAAAAATGCTGATCTCGGAACGGGAATGCCTTCTTTTTACCGAAGTCAAACTC
CTTTGGGTTGTAGTGAACAATCTCAGGTTCGGGAAATCCACCAGCCTTGGCGCACGCCTTTGCTAATCCATTGAAGGTCA
CGTACTTTTCTCCCGAAATGTTGAACACCTGCTTGCTGGCTTTTTCATTACCAAGAACCGCAATGAAAGCCGTTGCCAAG
TCCTTGACATGACCAAGTTGGGTTATTTGCACTCCAGAGTTGGGAATCGGAATAGGGCGACCGGCTTTCAATCGATGGAA
GAACCATTCTTCAACAGGGTTATAATTCAAAGGTCCATATATGTAGACT




Most similar to sp|Q9SA52|Y1934_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SA52|Y1934_ARATH Uncharacterized protein At1g09340,
           chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1
           SV=1
          Length = 378

 Score =  334 bits (856), Expect = 4e-91
 Identities = 155/169 (91%), Positives = 164/169 (97%)
 Frame = -2

Query: 688 VYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGVQITQLGHVKDLATAFIAVLGNEKASKQ 509
           VYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSG+QI+QLGHVKDLATAF+ VLGNEKAS++
Sbjct: 210 VYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLNVLGNEKASRE 269

Query: 508 VFNISGEKYVTFNGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKA 329
           +FNISGEKYVTF+GLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKA
Sbjct: 270 IFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKA 329

Query: 328 KHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDMIFGKSFVLQ 182
           KHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDDMI  K  VLQ
Sbjct: 330 KHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378