miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48741011|gb|CO071530.1|CO071530 GAGAGATATAATTGAAAGAAAAGAAAAACGGTTCTGCTAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCAACCGGA
ACGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAAAGATGAGGCTTCATCAATGGCGATGC
CGACGAGTCCGACGACACCTGGGACACCATCGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTGTTCAAT
CCAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGTTTATGA
CTGGTTCGTACAGATTTTTTTTTCTTGTTCAGTTATTTGCATGCATGCTTGCTTGGATAATTGGATATATATAAGTGGGA
CTTTGATTTTGCTTTTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCGTATATA
AATATTAACCAGGTGTTTTGGAATTTGGATTCTTTTTAATATATAGTACTAAAATGATGAATTTTTCAAAAAGGAAGCCT
CAAAAACTTTCCTGTTTGTGTGTGTTTTTTTTTCTAACGTTTTCTCAGCAACCAAACGGAGGCTCAGAGACAGATCATGC
AGGAAAACTTGGCTCTTTGTTTGGTAGCTGCGTGGAAATAACAGTATGCTGTAATTATTACACTAATCCATTTATAAGCT
TTTATTTTTAATTATTCTTGTTTATTTACTATAAGATGATAAATAACCAAAGATTAATTAGGGTAATTTGCATGGATCTA
ATTTCTGG




Most similar to sp|Q05349|12KD_FRAAN

>>sp|P40287|H4_ENTHI Histone H4 OS=Entamoeba histolytica PE=3 SV=1
          Length = 118

 Score =  105 bits (263), Expect(2) = 3e-23
 Identities = 51/65 (78%), Positives = 60/65 (92%)
 Frame = +3

Query: 147 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT 326
           +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVT
Sbjct: 40  QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVT 99

Query: 327 AMDVV 341
           AMDVV
Sbjct: 100 AMDVV 104



 Score = 23.9 bits (50), Expect(2) = 3e-23
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 346 ALKRQGRTLY 375
           ALKRQGRTLY
Sbjct: 106 ALKRQGRTLY 115


>sp|Q76NW2|H4_DICDI Histone H4 OS=Dictyostelium discoideum GN=H4a
           PE=1 SV=1
          Length = 108

 Score =  100 bits (250), Expect(2) = 9e-22
 Identities = 51/65 (78%), Positives = 57/65 (87%)
 Frame = +3

Query: 147 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT 326
           +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVT
Sbjct: 29  KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVT 88

Query: 327 AMDVV 341
           AMDVV
Sbjct: 89  AMDVV 93



 Score = 23.9 bits (50), Expect(2) = 9e-22
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +1

Query: 346 ALKRQGRTLY 375
           ALKRQGRTLY
Sbjct: 95  ALKRQGRTLY 104


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria
           ananassa PE=2 SV=1
          Length = 111

 Score =  112 bits (280), Expect = 3e-24
 Identities = 54/98 (55%), Positives = 64/98 (65%)
 Frame = +1

Query: 31  VLLEKLWDDVVAGPQPERGLGRLRKITTTPPLSTKDEXXXXXXXXXXXXXXXXXXXXXXR 210
           VLL+KLWDD+VAGPQPERGLG LRK+     L  + E                      R
Sbjct: 2   VLLDKLWDDIVAGPQPERGLGMLRKVPQPLNLKDEGESSKITMPTTPTTPVTPTTPISAR 61

Query: 211 RDNVWRSVFNPGSNLATKGIGAEVFDKPQPNSPTVYDW 324
           +DNVWRSVF+PGSNL++K +G +VFD PQPNSPTVYDW
Sbjct: 62  KDNVWRSVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDW 99