miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|49631370|gb|CO415122.1|CO415122 TTCATTTCTCTGTACATTTTTATTTCTTTAATAATAACAAATTATATCTTGTTCTTTTTTCTGTTTCACACCTTAGCCTT
TCTCTCTCAAGAAATACTACCTGATCAGGCTATAAATTACAAATTAAGCTTTGAAATATTATGTCAATGGATTTGATGGC
ATCCGAACGCGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAATAGTTCAATGA
ATATGGTGACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACCACCATT
CCTCCTCATCAAGATCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATC
ATCATCATCATCCAAATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGACCAACCTAGAATCTCTCCCA
TACGCCCACCAGAGAAAAGACAGCGGGTTCCTTCAGCATATAACAAGTTTATCAAAGAGGAG




Most similar to sp|Q9XFB0|YAB2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2
           OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1
          Length = 184

 Score =  129 bits (323), Expect = 1e-29
 Identities = 73/137 (53%), Positives = 87/137 (63%), Gaps = 3/137 (2%)
 Frame = +3

Query: 141 MSMDLMASERVCYVHCNFCNTILAVSVPCNSSMNMVTVRCGHCANLLSVNIGGSLQSTTI 320
           MS+D  +SERVCYVHC+FC TILAVSVP  S   +VTVRCGHC NLLS+NIG SL  T+ 
Sbjct: 1   MSVDF-SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA 59

Query: 321 PP-HQD--PQKQHLXXXXXXXXXXXXXXXXXXXXXXXXFGHAFESLELHDQPRISPIRPP 491
           PP HQD  P +QH                           +  E+++  + PR+ PIRPP
Sbjct: 60  PPIHQDLQPHRQHTTSLVTRKDCASSSRST---------NNLSENID-REAPRMPPIRPP 109

Query: 492 EKRQRVPSAYNKFIKEE 542
           EKRQRVPSAYN+FIKEE
Sbjct: 110 EKRQRVPSAYNRFIKEE 126