miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|50322667|gb|CO517793.1|CO517793 CGAGAGGAGACTTTGCTCGCTTTTGGTGGGCATCCGCGCGGAGCGTGACCACAGACGGTGTAGAGACTAGATAGATCGGA
AGGGGATCTAGGCATAGAGAGCGAGGAGGATGACCGGCGTTGTTGCAGGCGCCGGAGGGGGCAACAAGGCGGCGGGCGCC
ACGCTGCGGCTGCACCACTACCTTGTGATGGCCGGGGTGGCGGCGGCGTTCGTCCTCGCCTGCCTCCGGTACGCGCCGGA
CCCCGCGGGGTACGGCTTCCTGGCCGTGGCGCCGCGGCCGGTGGAGGCCGATGCTGGTGCCCGGCGGGACACCACTCCTC
CACCGCGCCCGTCGTCGTCGTCGTCGTCGGTGGTCATCTTCAACTTCGGTGACTCCAACTCCGACACGGGCGGCATGGCG
GCGGTCAACGGGATGAACATTAACCTGCCCGAGGGACGCACCTTCTTCCGCCGCCCCACCGGAAGGCTCTCCGATGGCCG
CCTCGTCATCGACTTCATCTGTGAGAGCCTGCACACGCCTTTCCTGAGCCCATACCTCAAGGCGCTGGGCGCGGATTTCA
GCAACGGCGTGAACTTCGCCATCGGCGGCTCGACGGCGACGCCGGGGGGCTCTCCATTCTCGCTGGACGTGCAGCTCCAT
CAGTGGCTCTACTTCAGGGCCAGGTCCATGGAGATGATCAACCTAGGACAGAGGCCTCCCATCGATCGCGAAGGATTCCG
AAAGGCCATCTACACCATCGACATCGGGCAGAACGACGTGTCTGCTTACATGCACCTGCCCTACGACCNAGTGCTTGCCA
AGATCCCTGGATTTGTTGCT




Most similar to sp|O80522|GDL2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O80522|GDL2_ARATH GDSL esterase/lipase At1g09390 OS=Arabidopsis
           thaliana GN=At1g09390 PE=2 SV=1
          Length = 370

 Score =  163 bits (413), Expect = 1e-39
 Identities = 86/162 (53%), Positives = 115/162 (70%), Gaps = 6/162 (3%)
 Frame = +2

Query: 353 VIFNFGDSNSDTGGMAAVNGMNINLPEGRTFFRRPTGRLSDGRLVIDFICESLHTPFLSP 532
           VIFNFGDSNSDTGG+ A  G +I LP GR+FF+R TGRLSDGRLVIDF+C+SL+T  L+P
Sbjct: 37  VIFNFGDSNSDTGGLVAGLGYSIGLPNGRSFFQRSTGRLSDGRLVIDFLCQSLNTSLLNP 96

Query: 533 YLKAL-GADFSNGVNFAIGGSTATPGGSPFSLDVQLHQWLYFRARSMEMINLG---QRPP 700
           YL +L G+ F NG NFAI GS+  P   PF+L++QL Q+L+F++R++E+ ++    +   
Sbjct: 97  YLDSLVGSKFQNGANFAIVGSSTLPRYVPFALNIQLMQFLHFKSRALELASISDPLKEMM 156

Query: 701 IDREGFRKAIYTIDIGQNDV--SAYMHLPYDXVLAKIPGFVA 820
           I   GFR A+Y IDIGQND+  S    L Y  V+  IP  ++
Sbjct: 157 IGESGFRNALYMIDIGQNDIADSFSKGLSYSRVVKLIPNVIS 198