miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|51527014|gb|CV063875.1|CV063875 GGCGGCGTAGGCCTGTACTTGGTGCAGCTTGCAAAGCTAGCGAACCTTCATGTTACCGCCACCTGCGGCGCCCGCAACAT
GGATCTTGTGAAGAGCTTGGGCGCGGATGAGGTGATGGACTACAAGACCCCAGAGGGGACGAGCCTGCAGAGCCCCTCCG
GCAGGAAGTACGACGGCGTGGTTCACTGCACCGTCGGTGTCAGCTGGTCGTCTTTCCAGCCATTGCTGACTGACGCCGGG
AGAGTTATCGACATCACCCCCAATTTCTCGGCCATCCTCACATCTGCGCTGCACTGGGTGACGTTCTCCAAGAAGCGCCT
CGTGCCCCTGCTCCTGTCGCCCAACAAGGCGGACCTGGAGTTCTTGGTCGGGCTGCTCAAGGAAGGCAAGCTGAAGACGG
TGATCGACTCGAGGTTCCCCTTGAGCGACGCAGGCAAGGCGTGGCAAAGCAGTATCGATGGCCATGCCACTGGTAAGATT
GTTGTTGAGATGGAGAGCTGATTGTCGTCGATGCTTATATAGTACTCCCTCCGTCCGGAAATACTTGTTCTAGAAATGTT
TGTTCTAGAAATGTACAAAATGGACGTATCTCCATAACTAAAATAAATCTAGATACATCTATTTCTAGGACAAGTATTT




Most similar to sp|Q9SV68|QORH_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog,
           chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2
           SV=1
          Length = 329

 Score =  216 bits (551), Expect = 8e-56
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +1

Query: 1   GGVGLYLVQLAKLANLHVTATCGARNMDLVKSLGADEVMDYKTPEGTSLQSPSGRKYDGV 180
           GGVG Y VQLAKLAN HVTATCGARN++ VKSLGADEV+DYKTPEG +L+SPSG+KYD V
Sbjct: 166 GGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAV 225

Query: 181 VHCTVGVSWSSFQPLLTDAGRVIDITPNFSAILTSALHWVTFSKKRLVPLLLSPNKADLE 360
           VHC  G+ +S F+P L++ G+VIDITP  +A+ T A+  +T SKK+LVPLLL P   +LE
Sbjct: 226 VHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLE 285

Query: 361 FLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 477
           F+V L+KEGK+KTVIDS+ PLS A  AW  SIDGHATGK
Sbjct: 286 FMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGK 324