miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|51823924|gb|CO893619.1|CO893619 CACGCGTCCGACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGGGAATACAATTGTCTAACTTTTTATTTTTGG
TCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAA
ATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAA
CAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGGGAAGCTAAT
CAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAGAGGAGGCATGAAGGA
TGACCGGCGGGACAGATACTCTGCGGGCAAGAGGGGTGGATTTAATACATTTAGAGACAGGGAAAATTATGACCGCGGTT
ACTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGC
TTTGGAAGTAATTTTGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGAACGGTTA
TGATAGCACTCAGCAATATGGAAGTAACGTTCCAAATATGCACAATGGTATGAACCAACAGGCATATGCATATCCTGCTA
CTGCAGCTGCGCCTATGATTGGTTATCCGATGCCNACA




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
            OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  347 bits (890), Expect = 5e-95
 Identities = 174/205 (84%), Positives = 174/205 (84%)
 Frame = +3

Query: 144  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 323
            DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 324  AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 503
            AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466  AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 504  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 683
            FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH
Sbjct: 526  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 585

Query: 684  NGMNQQXXXXXXXXXXXMIGYPMPT 758
            NGMNQQ           MIGYPMPT
Sbjct: 586  NGMNQQAYAYPATAAAPMIGYPMPT 610