miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|52527886|gb|CV274911.1|CV274911 TTTTTTTTTTTTTTTTTTGGCAGCTAAATGAGGAAGAACATAGATAGATTATAAGTCTTGATCTTAAATCAGAGTGTTCA
AATTAAAGACATTCAGGTCCAAACTAGAGAGCACACACAGATAGCGAAGACCGCATATAGCATCATGAGCAATCAGCCTT
AGATTTGAGCAGAGTGACTGCTAATGATGTTATATCATTTTATGAAGCTCCTCGTGTGCTTAAACCTCCCACCAGAAGAT
TGTTCCGCCTATCGGAACCCCCCTCCAAGAGCGGGAGCCCAGTAGTCTGCTCCATTATCGCTGCCAACTTGCAGTGTGCA
TGACACTGGAACAAGACACAATCCTCTACTCCTCAGGTCCTTTGGCTCCCCGTGAGAGTCCTGCTGAGAAGCTCCTTTCC
TCTTTATGCAGCTATCATTCAACAGCTGACCGGGGTCCTCAGGAAATATACAGTTGCTTTCTCCTTGAACAGATTGTTGC
TGCCTCATATTTGTGGATCCACTGCCCAAGTACGGTAAGCTGAGAGCCTCAATTTGGCTCTGAAGGAATCTGATGTACCC
AATAGCTTCTAACAAGACAGAGGCCGTGTCAGTCTTCCCAAATGGAGAAACAAGCTGGTGAAGAGCGGTAATCCTATCAC
CTAATTTCTCCTTCCTCACCTTAAAGGTAGGTTGGGCGGAAGAAGATTGAACCCTAGCTTTCTTTACTGCCCCACCATTA
GCGGTGCTGTTACAATCAGAAGATCGATCTGGTGGTGGATGCCTTCCATCTCCTTTGCTGGTAGAGAAATCCAACATGTT
ACTGCTGAAACTGGTAACACAGGACTTGGGGGATGAAGCAGGTATCACTTGAGAACAAGCTGTAGGTTTTGCAGCTGCC




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  255 bits (652), Expect = 3e-67
 Identities = 145/222 (65%), Positives = 165/222 (74%), Gaps = 29/222 (13%)
 Frame = -2

Query: 842 PASSP-KSCVTSFSS--------------NMLDFSTSKG-----DGRHPPPDRSSDCNST 723
           P S P KSCVT+ ++              NMLDFS++       +GRH PPDRSS+CNS 
Sbjct: 181 PNSPPNKSCVTTTTTTSLNSNDDNINNNNNMLDFSSNHNGLHLSEGRHTPPDRSSECNSL 240

Query: 722 ANGGAV-KKARVQSS-SAQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIR 549
             GG+  KK R+Q S S+Q T KVRKEKLG RI ALHQLVSPFGKTDTASVL EAIGYIR
Sbjct: 241 EIGGSTNKKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIR 300

Query: 548 FLQSQIEALSLPYLG-SGSTNMRQQQSVQGESNCIFPEDPGQLLNDSCIKRKGAS----- 387
           FLQSQIEALS PY G + S NMR QQ +QG+ +CIFPEDPGQL+ND C+KR+GAS     
Sbjct: 301 FLQSQIEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTD 360

Query: 386 QQDSHGEP-KDLRSRGLCLVPVSCTLQVGSDNGADYWAPALG 264
            Q++  EP KDLRSRGLCLVP+SCTLQVGSDNGADYWAPALG
Sbjct: 361 NQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAPALG 402