miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|52618969|gb|CR775720.1|CR775720 CCGGGGGGGGGCGAAGGCCCGAGCGCGGCCCGGCGGGCGCGTGGTTTTTGTCAGGCGAAACGTACACGGCAGGTGTCCTG
CGCCTCCTCCTCCGTCACCTGCCGCAGGTACGCCCTCGCTGGGGCCTCCCTGTCCGCGGGGCGGGGCAGCGCGCCTTCCT
CTTCCTGGGCAGCCTCGGGACGGGGCGCCGCGGCCGGGCGGGCAGCATGAATAACCCTATACCTTCCAATTTGAAATCAG
AAGCAAAAAAGGCTGCCAAAATATTAAGAGAATTCACAGAAATAACTTCCAGAAATGGACCTGATAAGATCATTCCTGCT
CACGTAATTGCAAAGGCTAAAGGCCTTGCAATTCTGTCTGTGATCAAAGCCGGGTTCCTGGTGACTGCTAGAGGAGGCAG
CGGGATTGTAGTGGCGCGCCTTCCAGATGGAAAGTGGTCTGCACCCTCAGCCATTGGGATAGCTGGCCTTGGTGGGGGAT
TTGAAATAGGAATTGAGGTATCAGACTTGGTGATA




Most similar to sp|Q5RAQ2|SH3Y1_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5RAQ2|SH3Y1_PONAB SH3 domain-containing YSC84-like protein 1
           OS=Pongo abelii GN=SH3YL1 PE=2 SV=1
          Length = 342

 Score =  163 bits (413), Expect = 5e-40
 Identities = 87/103 (84%), Positives = 87/103 (84%)
 Frame = +3

Query: 207 MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT 386
           MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT
Sbjct: 1   MNNPIPSNLKSEAKKAAKILREFTEITSRNGPDKIIPAHVIAKAKGLAILSVIKAGFLVT 60

Query: 387 ARGGSGIVVARLPDGKWSAPSXXXXXXXXXXXXXXXXVSDLVI 515
           ARGGSGIVVARLPDGKWSAPS                VSDLVI
Sbjct: 61  ARGGSGIVVARLPDGKWSAPSAIGIAGLGGGFEIGIEVSDLVI 103