miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|54624792|gb|CV631928.1|CV631928 CAAGAAATACTACCTGATCAGGCTATAAATTACAAATTAAGCTTTGAAATATTATGTCAATGGATTTGATGGCATCCGAA
CGCGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAATAGTTCAATGAATATGGT
GACGGTGAGATGTGGGCATTGTGCCAATCTGCTCTCTGTTAATATTGGAGGTTCCCTTCAGTCGACCACCATTCCTCCTC
ATCAAGATCCCCAGAAACAACACCTGAGCTCTGAGGATTCAAATAAGAACTGCGGCTCATCATCATCATCATCATCATCA
TCATCCAAATCCAACAAGTTTGGTCATGCATTTGAGTCTCTAGAGCTTCATGACCAACCTAGAATCTCTCCCATACGCCC
ACCAGAGAAAAGACAGCGGGTTCCTTCAGCATATAACAGGTTTATCAAGGAGGAGATCCAAAGGATTAAGGCTAGTAATC
CTGACATTAGCCATAGGGAAGCTTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCCCACATTCACTTTGGATTAAAG
CTGGATGCCAACAGGGAACCCAAGCTAGACCAGGCTTTTTGCAGGAGAGGGAACTCAAAAGTCTAATGGCT




Most similar to sp|Q9XFB0|YAB2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2
           OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1
          Length = 184

 Score =  210 bits (534), Expect = 7e-54
 Identities = 114/185 (61%), Positives = 131/185 (70%), Gaps = 4/185 (2%)
 Frame = +3

Query: 54  MSMDLMASERVCYVHCNFCNTILAVSVPCNSSMNMVTVRCGHCANLLSVNIGGSLQSTTI 233
           MS+D  +SERVCYVHC+FC TILAVSVP  S   +VTVRCGHC NLLS+NIG SL  T+ 
Sbjct: 1   MSVDF-SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSA 59

Query: 234 PP-HQD--PQKQHLXXXXXXXXXXXXXXXXXXXXXXXXFGHAFESLELHDQPRISPIRPP 404
           PP HQD  P +QH                           +  E+++  + PR+ PIRPP
Sbjct: 60  PPIHQDLQPHRQHTTSLVTRKDCASSSRST---------NNLSENID-REAPRMPPIRPP 109

Query: 405 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDANREPK 584
           EKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLD N++ K
Sbjct: 110 EKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGK 169

Query: 585 -LDQA 596
            LDQ+
Sbjct: 170 QLDQS 174