miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|57003108|gb|CX146453.1|CX146453 TTTTTTTTTTTTTTTTTTAACACTAATAGTCATTCATTTTATTGAACAGTATCTTAAGAAAAACAGTACACGCAGTGTTG
ATCATTTTCATACAAAATAGTAGGAGTTGGTAGAGATGAGGGAGAGGAGCTTTAATCCATTCTGGCCTTCAGGGTACGTG
TGGTGATCTTGTCCTTCTCAATGACTTGCACAATGACACCCATGCCTGAAACGGCATCCCTGTCCACTGCATTCAGCATG
GCTTGGGAGATGGTCTCAAACAGGTCCTCTGGTTCCATGTCTGGCTCCCAGAGAGATTCACACATGCCGTACATCTGCTC
TGAGCAAGTGCCGCTCACAACAAAGTCCTCTGTCACCATGGGGCAGCCAATCAGGTCCAGCGAGCAGATAAATGGCTCAA
AGGTCTTGGGGTCCAGCCCAGCGATCACAGGCTCAATGTAGTATGGTCCAAATCTCCTCTCATACAGCAGGTTGGAGACC
ATGCTCATGAATGTCTTGGGTTTGATCTGACGCCCCTCCTTCAGCTCATAGAGGTTCAATCTGAACTTGAGCCTCTGGGA
AACTGTCTGTACGTCAGTAGCCAGGCCAGCCAGGCCAATGTAGAGTCTGTCTCCCATGGGAAAGATCTTCTGGAAGTCTG
TGGTCACCATCTGAGCCTGTACACCGAATCTTCGTCTGCTGCATGGCTACCTTGCTTACCTTCATCGCAT




Most similar to sp|O73817|PSB3_ONCMY

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus
           mykiss GN=psmb3 PE=2 SV=1
          Length = 205

 Score =  358 bits (920), Expect = 1e-98
 Identities = 177/178 (99%), Positives = 178/178 (100%)
 Frame = -1

Query: 668 FGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTF 489
           FGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTF
Sbjct: 28  FGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTF 87

Query: 488 MSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMY 309
           MSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMY
Sbjct: 88  MSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMY 147

Query: 308 GMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVIVQVIEKDKITTRTLKARMD 135
           GMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGV+VQVIEKDKITTRTLKARMD
Sbjct: 148 GMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVQVIEKDKITTRTLKARMD 205