miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|57813893|gb|CX615106.1|CX615106 TGAAGAGGTACAGCGAAGATGACATGGCCTACAAGATGTTCTCACGTGCAAAGCTGGATGATGGTTTACTGGATCAGATA
TTCAGCAAGAGGAAAGAGACGATCCGGATAAACTGGGCTGCTTACCCGCACTACCAAGCCCCCGAAGAGTTTGCTCCGAT
AGTGCTGGACGGGAAGCAGCTGTACTACGTGAACACCTTTGAGAGCGCGGCGAGCCCCATAGAGACGGGTGCCGTGGCAG
CAGAGAATGTGGCACGGCTCATCATTTCGAGGCGTTCTCTACCGCAGCGAGGAGTGGAGCCTGATGCTCCTCATATCAAG
CCATTCGCGGAGCAGGAGGAAGAAGGATCCCAGCGTCGGCATGTAGACCTGTGATTCTGTGAAGCTGGGCTGGGATGTGC
CTGTCCCTGTGAAACTTTGTATAGATTTTAGCTGGGCACTCTAGGCGCAACAGATGCATTATGTGTGGAGCTGTGGCACT
CTGGCTTTTAGCTGTGTTGATTGAGTTGTACTCGACTACTATTACTTGAGTGTCTGCTGTTGAGTTGCAGCGGCATTTTG
GTACATTTGATTTGGTGACGAATGTTTTGTAGATGGATGATACAATATATCATACTGTAGCACTTTTGTTTGTATTTGAT
AAACATTGTCTAATCATAGATCAACTAGACTCAAAAGATTCGTCTCGCAAATTACAGGCAAACTGTGTAATTAGTTATTA
TTTTTATCGGTATTTAATGTTTCATGTATGTACTGC




Most similar to sp|P57681|PCYOX_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P57681|PCYOX_ARATH Probable prenylcysteine oxidase
           OS=Arabidopsis thaliana GN=At5g63910 PE=2 SV=1
          Length = 500

 Score =  122 bits (306), Expect = 3e-27
 Identities = 56/90 (62%), Positives = 70/90 (77%)
 Frame = +3

Query: 3   KRYSEDDMAYKMFSRAKLDDGLLDQIFSKRKETIRINWAAYPHYQAPEEFAPIVLDGKQL 182
           ++YS+ DM YK+F+R    D LLD++FS+R ET+RI+W AYP Y APE FAP +LD   L
Sbjct: 388 RKYSKTDMTYKIFTRQPASDSLLDELFSRRTETVRIDWGAYPKYHAPEVFAPFILDDHHL 447

Query: 183 YYVNTFESAASPIETGAVAAENVARLIISR 272
           YYVN FE+AAS +ET AVA EN+ARLIISR
Sbjct: 448 YYVNAFENAASTMETSAVAGENIARLIISR 477